Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p08330 Brassica napus HOM05D000558 ORTHO05D042279 4.0e-30 134.0 65 100.0
BraA07t28616Z Brassica rapa HOM05D000558 ORTHO05D042279 4.0e-30 134.0 65 100.0
C07p13000 Brassica napus HOM05D000558 ORTHO05D003119 5.6e-24 113.6 56 94.6
Thhalv10009320m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 9.6e-16 86.3 55 74.5
AT1G14230 Arabidopsis thaliana HOM05D000558 ORTHO05D003119 1.6e-15 85.5 54 72.2
Sp1g12590 Schrenkiella parvula HOM05D000558 ORTHO05D003119 2.1e-15 85.1 54 74.1
AT1G14250 Arabidopsis thaliana HOM05D000558 ORTHO05D003119 2.8e-15 84.7 57 66.7
AL1G26120 Arabidopsis lyrata HOM05D000558 ORTHO05D003119 8.2e-15 83.2 54 72.2
Thhalv10007743m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 1.1e-14 82.8 55 70.9
BcaC07g41586 Brassica carinata HOM05D000558 ORTHO05D003119 2.4e-14 81.6 55 67.3
C08p45880 Brassica napus HOM05D000558 ORTHO05D003119 2.4e-14 81.6 55 67.3
BolC8t52140H Brassica oleracea HOM05D000558 ORTHO05D003119 2.4e-14 81.6 55 67.3
Sp1g12580 Schrenkiella parvula HOM05D000558 ORTHO05D003119 2.4e-14 81.6 54 75.9
Thhalv10007616m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 3.1e-14 81.3 55 72.7
Thhalv10007159m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 6.9e-14 80.1 53 75.5
BcaB08g34380 Brassica carinata HOM05D000558 ORTHO05D003119 9.0e-14 79.7 55 67.3
A06p10210 Brassica napus HOM05D000558 ORTHO05D003119 9.0e-14 79.7 54 72.2
C05p11990 Brassica napus HOM05D000558 ORTHO05D003119 9.0e-14 79.7 54 72.2
BraA06t24204Z Brassica rapa HOM05D000558 ORTHO05D003119 9.0e-14 79.7 54 72.2
Sp1g12600 Schrenkiella parvula HOM05D000558 ORTHO05D003119 1.5e-13 79.0 55 69.1
CARHR014660 Cardamine hirsuta HOM05D000558 ORTHO05D003119 2.6e-13 78.2 54 68.5
Carub.0001s1393 Capsella rubella HOM05D000558 ORTHO05D003119 3.4e-13 77.8 56 66.1
AT1G14240 Arabidopsis thaliana HOM05D000558 ORTHO05D003119 4.5e-13 77.4 56 64.3
Thhalv10007501m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 4.5e-13 77.4 54 68.5
BraA06t24205Z Brassica rapa HOM05D000558 ORTHO05D003119 7.6e-13 76.6 55 65.5
BcaC05g25318 Brassica carinata HOM05D000558 ORTHO05D003119 1.0e-12 76.3 55 65.5
C05p12000 Brassica napus HOM05D000558 ORTHO05D003119 1.0e-12 76.3 55 65.5
BolC5t29955H Brassica oleracea HOM05D000558 ORTHO05D003119 1.0e-12 76.3 55 65.5
CARHR014670 Cardamine hirsuta HOM05D000558 ORTHO05D003119 1.0e-12 76.3 57 63.2
Carub.0001s1392 Capsella rubella HOM05D000558 ORTHO05D003119 1.3e-12 75.9 58 65.5
CARHR014650 Cardamine hirsuta HOM05D000558 ORTHO05D003119 1.3e-12 75.9 57 64.9
A06p10220 Brassica napus HOM05D000558 ORTHO05D003119 2.2e-12 75.1 55 63.6
BcaB06g26570 Brassica carinata HOM05D000558 ORTHO05D003119 7.2e-11 70.1 35 88.6
BraA09t41592Z Brassica rapa HOM05D000558 ORTHO05D024040 7.2e-11 70.1 51 62.7
AL1G26130 Arabidopsis lyrata HOM05D000558 ORTHO05D003119 4.6e-10 67.4 47 66.0
Aa31LG1G810 Aethionema arabicum HOM05D000558 ORTHO05D003119 7.9e-10 66.6 54 61.1
TAR374G1351 Trochodendron aralioides HOM05D000558 ORTHO05D003119 7.4e-08 60.1 39 71.8
PSO017G3323 Papaver somniferum HOM05D000558 ORTHO05D003119 9.7e-08 59.7 48 56.2
PSO478G4242 Papaver somniferum HOM05D000558 ORTHO05D003119 2.8e-07 58.2 48 54.2
Gohir.D12G168000 Gossypium hirsutum HOM05D000558 ORTHO05D003119 4.8e-07 57.4 39 69.2
Oeu054873.2 Olea europaea HOM05D000558 ORTHO05D003119 4.8e-07 57.4 40 67.5
TWI79G0306 Tripterygium wilfordii HOM05D000558 ORTHO05D003119 4.8e-07 57.4 37 73.0
CAN.G1335.7 Capsicum annuum HOM05D000558 ORTHO05D003119 6.3e-07 57.0 54 55.6
Solyc05g007670.4 Solanum lycopersicum HOM05D000558 ORTHO05D003119 6.3e-07 57.0 54 55.6
Sopen05g003550 Solanum pennellii HOM05D000558 ORTHO05D003119 6.3e-07 57.0 54 55.6
PGSC0003DMG400018413 Solanum tuberosum HOM05D000558 ORTHO05D003119 6.3e-07 57.0 54 55.6
CSS0017226 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D003119 8.2e-07 56.6 40 67.5
Ciclev10031190m.g Citrus clementina HOM05D000558 ORTHO05D003119 8.2e-07 56.6 39 66.7
Gohir.A12G164900 Gossypium hirsutum HOM05D000558 ORTHO05D003119 1.1e-06 56.2 39 66.7
Gorai.008G180900 Gossypium raimondii HOM05D000558 ORTHO05D003119 1.1e-06 56.2 39 69.2
Nitab4.5_0000145g0030 Nicotiana tabacum HOM05D000558 ORTHO05D003119 1.1e-06 56.2 54 53.7
TWI31G0078 Tripterygium wilfordii HOM05D000558 ORTHO05D003119 1.1e-06 56.2 39 69.2
Atru.chr11.1781 Acer truncatum HOM05D000558 ORTHO05D003119 1.4e-06 55.8 40 62.5
Oeu055112.1 Olea europaea HOM05D000558 ORTHO05D003119 1.4e-06 55.8 39 64.1
Ah.02g129670 Amaranthus hybridus HOM05D000001 ORTHO05D000501 1.8e-06 55.5 37 70.3
Nitab4.5_0004661g0070 Nicotiana tabacum HOM05D000558 ORTHO05D003119 1.8e-06 55.5 54 53.7
Potri.008G086400 Populus trichocarpa HOM05D000558 ORTHO05D003119 1.8e-06 55.5 38 68.4
Sabra08G0064200 Salix brachista HOM05D000558 ORTHO05D003119 1.8e-06 55.5 42 64.3
TAR622G1042 Trochodendron aralioides HOM05D000558 ORTHO05D003119 1.8e-06 55.5 39 64.1
Actinidia33198 Actinidia chinensis HOM05D000558 ORTHO05D003119 2.4e-06 55.1 39 66.7
Aqoxy3G03385 Aquilegia oxysepala HOM05D000558 ORTHO05D003119 2.4e-06 55.1 39 64.1
Aqoxy3G03388 Aquilegia oxysepala HOM05D000558 ORTHO05D003119 2.4e-06 55.1 39 64.1
MD13G1072000 Malus domestica HOM05D000558 ORTHO05D003119 2.4e-06 55.1 39 66.7
MD16G1072600 Malus domestica HOM05D000558 ORTHO05D003119 2.4e-06 55.1 39 66.7
Cc11_g12990 Coffea canephora HOM05D000558 ORTHO05D003119 3.1e-06 54.7 55 49.1
Thhalv10003943m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 3.1e-06 54.7 37 67.6
Glyma.01G047100 Glycine max HOM05D000558 ORTHO05D003119 3.1e-06 54.7 40 62.5
Glyma.02G107700 Glycine max HOM05D000558 ORTHO05D003119 3.1e-06 54.7 40 62.5
Lj3A1037G66 Lonicera japonica HOM05D000558 ORTHO05D003119 4.1e-06 54.3 37 67.6
Aa31LG2G7370 Aethionema arabicum HOM05D000558 ORTHO05D003119 5.3e-06 53.9 37 67.6
Lalb_Chr10g0098291 Lupinus albus HOM05D000558 ORTHO05D003119 5.3e-06 53.9 37 64.9
Peaxi162Scf00222g00822 Petunia axillaris HOM05D000558 ORTHO05D003119 5.3e-06 53.9 39 64.1
QL03p063904 Quercus lobata HOM05D000558 ORTHO05D003119 5.3e-06 53.9 56 51.8
RcHm_v2.0_Chr4g0439831 Rosa chinensis HOM05D000558 ORTHO05D003119 5.3e-06 53.9 39 64.1
THA.LOC104824081 Tarenaya hassleriana HOM05D000558 ORTHO05D003119 5.3e-06 53.9 40 65.0
AL5G12590 Arabidopsis lyrata HOM05D000558 ORTHO05D003119 6.9e-06 53.5 47 55.3
arahy.Tifrunner.gnm1.ann1.2KLD4P Arachis hypogaea HOM05D000558 ORTHO05D003119 6.9e-06 53.5 42 61.9
arahy.Tifrunner.gnm1.ann1.FI4HQ3 Arachis hypogaea HOM05D000558 ORTHO05D003119 6.9e-06 53.5 42 61.9
BcaC06g31208 Brassica carinata HOM05D000558 ORTHO05D003119 6.9e-06 53.5 50 50.0
BcaC06g34027 Brassica carinata HOM05D000558 ORTHO05D003119 6.9e-06 53.5 50 50.0
A06p43350 Brassica napus HOM05D000558 ORTHO05D003119 6.9e-06 53.5 50 50.0
C07p33600 Brassica napus HOM05D000558 ORTHO05D003119 6.9e-06 53.5 50 50.0
BolC7t43869H Brassica oleracea HOM05D000558 ORTHO05D003119 6.9e-06 53.5 50 50.0
BraA06t27221Z Brassica rapa HOM05D000558 ORTHO05D003119 6.9e-06 53.5 50 50.0
Psat2g119800 Pisum sativum HOM05D000558 ORTHO05D003119 6.9e-06 53.5 37 64.9
Eucgr.G02502 Eucalyptus grandis HOM05D000558 ORTHO05D003119 9.0e-06 53.1 36 69.4
MBI02_g08831_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D003119 9.0e-06 53.1 40 60.0
Manes.05G102900 Manihot esculenta HOM05D000558 ORTHO05D003119 9.0e-06 53.1 42 59.5
VMungo1215G0130 Vigna mungo HOM05D000558 ORTHO05D003119 9.0e-06 53.1 37 64.9


User provided reference genes

Program Settings