Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 0.0e+00 1190.6 712 100.0
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 0.0e+00 1181.4 725 92.4
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.9e-258 896.0 737 80.3
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 2.1e-249 865.9 742 79.4
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 1.2e-247 860.1 737 79.0
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 7.6e-231 804.3 721 76.4
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 2.0e-215 753.1 631 77.0
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.6e-215 752.7 647 79.9
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 2.3e-211 739.6 789 69.5
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 2.8e-193 679.5 769 65.4
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 9.1e-192 674.5 795 63.6
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 3.8e-190 669.1 788 64.2
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 7.4e-186 654.8 780 65.4
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.8e-184 650.2 791 64.9
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 5.0e-182 642.1 779 65.1
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 8.8e-179 631.3 774 64.9
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 9.1e-176 621.3 742 63.2
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 3.6e-172 609.4 800 61.8
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 2.8e-156 556.6 716 62.3
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.7e-145 519.6 796 52.9
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 3.1e-139 500.0 750 57.5
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.0e-134 485.0 804 48.8
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 9.6e-117 425.2 616 57.5
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 5.3e-115 419.5 613 56.9
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 4.8e-92 343.2 571 46.6
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 1.1e-91 342.0 870 40.1
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.1e-88 332.0 577 44.5
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 5.5e-88 329.7 502 45.6
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 9.4e-88 328.9 715 38.3
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.9e-86 323.6 512 43.9
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 5.1e-86 323.2 817 38.1
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 5.1e-86 323.2 861 40.9
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 6.7e-86 322.8 701 44.9
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 1.5e-85 321.6 701 38.7
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 3.3e-85 320.5 707 38.9
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 5.7e-85 319.7 677 39.3
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 7.4e-85 319.3 705 40.0
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 7.4e-85 319.3 478 50.0
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.3e-84 318.5 825 37.8
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.7e-84 318.2 618 47.1
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.7e-84 318.2 840 36.5
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.2e-84 317.8 775 41.5
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.8e-84 317.4 603 40.1
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 2.8e-84 317.4 817 41.2
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 3.7e-84 317.0 840 38.8
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.8e-83 314.7 851 36.2
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 6.9e-83 312.8 819 37.0
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.5e-82 311.6 751 37.0
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.3e-81 308.5 809 36.6
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 1.3e-81 308.5 844 35.2
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 2.2e-81 307.8 676 37.9
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.8e-81 307.0 688 37.2
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 8.5e-81 305.8 544 48.5
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.2e-80 303.5 809 36.5
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 7.2e-80 302.8 807 40.3
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 9.4e-80 302.4 736 39.1
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 3.6e-79 300.4 852 38.6
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 3.9e-78 297.0 669 37.4
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 6.7e-78 296.2 860 36.2
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.0e-77 294.7 804 39.3
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.7e-76 291.6 671 37.4
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.8e-76 290.8 662 37.0
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 2.8e-76 290.8 678 43.2
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.8e-75 288.1 833 34.9
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 2.4e-75 287.7 660 37.6
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.1e-75 287.3 621 38.2
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 3.1e-75 287.3 820 35.6
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 4.1e-75 287.0 715 41.1
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 7.0e-75 286.2 641 37.6
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.5e-74 285.0 525 40.0
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 2.0e-74 284.6 833 35.2
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 3.5e-74 283.9 805 36.4
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 4.5e-74 283.5 831 39.2
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 7.7e-74 282.7 818 35.2
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 1.3e-73 282.0 664 37.8
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.5e-72 278.5 865 37.3
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.5e-72 278.5 564 45.7
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-72 278.1 787 35.3
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 2.5e-72 277.7 726 42.4
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 5.5e-72 276.6 488 42.0
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 5.5e-72 276.6 730 40.7
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 7.2e-72 276.2 868 32.8
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 9.4e-72 275.8 758 36.4
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.1e-71 274.6 829 34.4
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 2.7e-71 274.2 822 34.8
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 2.7e-71 274.2 714 36.0
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.6e-71 273.9 824 34.6
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 6.1e-71 273.1 719 36.7
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 8.0e-71 272.7 717 42.7
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.8e-70 271.6 712 35.5
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 2.3e-70 271.2 710 39.9
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 2.3e-70 271.2 805 38.9
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 3.0e-70 270.8 577 36.9
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 3.9e-70 270.4 832 34.3
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 5.2e-70 270.0 795 39.4
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.2e-70 270.0 621 38.2
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.5e-69 268.5 844 37.2
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 5.7e-69 266.5 741 40.5
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 5.7e-69 266.5 756 35.6
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 7.4e-69 266.2 708 38.0
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 9.7e-69 265.8 852 37.6
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.3e-68 265.4 723 39.4
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 1.7e-68 265.0 700 42.0
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.7e-68 265.0 859 38.6
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.7e-68 265.0 808 38.7
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.8e-68 264.2 865 36.4
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.8e-68 264.2 803 36.5
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-68 263.5 796 36.1
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 2.4e-67 261.2 609 38.1
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 5.3e-67 260.0 655 38.6
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 2.0e-66 258.1 531 47.6
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.5e-66 257.3 860 33.4
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 4.5e-66 256.9 707 40.7
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 1.3e-65 255.4 694 42.4
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 3.8e-65 253.8 846 32.9
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 1.5e-64 251.9 666 38.9
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 6.1e-63 246.5 860 39.2
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.3e-62 244.6 859 31.3
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 3.7e-60 237.3 810 38.6
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 6.3e-60 236.5 543 44.6
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 2.0e-58 231.5 685 39.7
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 2.0e-58 231.5 670 41.5
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 3.5e-58 230.7 482 46.1
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 5.9e-58 229.9 849 36.5
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.7e-57 228.4 995 30.1
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.7e-57 228.4 812 33.5
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.9e-56 224.9 353 43.6
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.2e-55 222.2 674 39.3
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 6.1e-55 219.9 531 43.7
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 4.0e-54 217.2 451 42.4
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 1.5e-48 198.7 518 42.3
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 5.4e-43 180.3 324 50.9
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 5.0e-41 173.7 240 49.2
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 2.8e-39 167.9 216 46.3
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 3.4e-37 161.0 854 32.3
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 4.4e-29 134.0 100 72.0
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 7.5e-29 133.3 167 47.9
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.3e-28 132.5 176 47.7
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 8.3e-28 129.8 545 31.9
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 4.1e-27 127.5 441 40.8
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.3e-25 122.5 477 28.7
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 6.2e-23 113.6 801 26.6
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 3.4e-21 107.8 81 71.6
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 7.6e-21 106.7 434 29.5
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 2.4e-19 101.7 579 27.8
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.0e-17 94.7 74 68.9
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.9e-16 92.0 710 25.8
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.3e-16 90.9 71 69.0
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-15 89.0 66 69.7
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 6.2e-15 87.0 174 41.4
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 2.4e-14 85.1 56 73.2
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 5.2e-14 84.0 493 25.6
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 5.2e-14 84.0 78 57.7
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 7.6e-13 80.1 728 27.1
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 1.3e-12 79.3 49 83.7
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 3.2e-11 74.7 63 65.1
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.7e-10 71.6 55 69.1
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.0e-10 70.5 55 69.1
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-09 69.3 47 76.6
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.9e-09 67.8 96 42.7
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.9e-09 67.8 47 74.5
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.1e-09 67.4 48 75.0
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.6e-09 67.0 50 70.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.9e-08 65.5 50 68.0
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 3.3e-08 64.7 47 70.2
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 5.6e-08 63.9 748 24.6
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 5.6e-08 63.9 619 26.5
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.6e-08 63.2 38 84.2
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.3e-07 62.8 38 84.2
AL5G30090 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 2.1e-07 62.0 41 85.4
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-07 60.8 38 78.9
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-06 59.7 38 78.9
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-06 58.9 39 76.9
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 2.4e-06 58.5 78 44.9
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.3e-06 57.4 39 74.4


User provided reference genes

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