Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 0.0e+00 1140.2 582 100.0
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 0.0e+00 1129.0 582 99.1
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1089.3 589 96.1
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 0.0e+00 1089.3 589 96.1
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 4.3e-309 1063.9 601 92.7
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.3e-305 1052.4 601 91.2
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 2.1e-303 1045.0 597 91.3
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.4e-302 1042.3 601 90.0
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.4e-302 1042.3 597 91.0
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.1e-301 1039.3 597 90.6
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 2.2e-300 1035.0 593 91.1
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 2.2e-300 1035.0 593 91.1
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 2.2e-300 1035.0 593 91.1
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.8e-300 1034.6 598 90.3
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 7.0e-299 1030.0 599 89.1
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 3.0e-294 1014.6 604 86.9
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.2e-290 1002.7 605 84.5
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.8e-286 988.8 540 93.7
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.1e-283 979.5 600 84.5
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 9.1e-283 976.5 607 82.9
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 1.7e-276 955.7 544 91.4
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 8.9e-262 906.7 607 76.8
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 6.2e-255 884.0 594 76.1
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.4e-254 882.9 600 76.0
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.2e-253 879.8 597 77.1
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 2.0e-253 879.0 601 74.9
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.6e-253 878.6 596 76.0
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.4e-253 877.9 594 75.1
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 9.8e-253 876.7 605 73.9
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.3e-252 876.3 596 74.7
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 2.2e-252 875.5 594 75.1
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 2.9e-252 875.2 606 73.9
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 8.3e-252 873.6 586 76.1
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.1e-251 873.2 603 75.0
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.1e-251 873.2 605 73.6
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.4e-251 872.8 594 74.6
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 3.2e-251 871.7 594 75.6
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 4.1e-251 871.3 597 75.4
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 5.4e-251 870.9 594 74.9
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 2.1e-250 869.0 596 74.0
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.7e-250 868.6 605 73.7
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.5e-250 868.2 607 73.0
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.3e-249 866.3 598 74.6
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 2.3e-249 865.5 596 73.8
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 7.3e-248 860.5 595 74.1
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 2.1e-247 859.0 591 75.6
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 4.7e-247 857.8 599 74.1
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.1e-246 856.7 598 73.6
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 1.4e-246 856.3 599 74.0
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.8e-246 855.9 593 73.5
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.3e-246 855.5 599 74.0
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 6.8e-246 854.0 594 74.1
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 7.6e-245 850.5 608 71.7
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 1.7e-244 849.4 602 72.8
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.2e-244 849.0 596 72.5
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 8.4e-244 847.0 598 71.1
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 1.1e-243 846.7 608 72.2
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.9e-243 845.9 598 71.1
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 6.0e-242 840.9 601 71.4
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 1.0e-241 840.1 595 72.8
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.1e-240 836.6 593 71.3
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.5e-240 835.5 605 70.9
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.5e-240 835.5 598 72.1
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 4.3e-240 834.7 605 70.7
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 7.3e-240 833.9 604 70.7
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 9.6e-240 833.6 605 70.6
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 9.6e-240 833.6 611 71.2
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 2.8e-239 832.0 589 72.7
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 5.2e-238 827.8 595 71.9
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 8.9e-238 827.0 595 72.1
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.0e-237 825.9 595 71.9
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 5.8e-237 824.3 593 71.3
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.2e-236 822.4 597 71.0
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.2e-236 822.4 597 72.2
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.2e-236 822.4 593 71.7
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 2.2e-236 822.4 594 71.5
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 3.8e-236 821.6 595 71.6
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 3.8e-236 821.6 595 71.6
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 4.9e-236 821.2 594 71.4
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.9e-235 819.3 594 71.2
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.6e-234 816.2 596 71.3
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 2.1e-234 815.8 598 70.7
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 6.0e-234 814.3 585 71.5
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.0e-233 813.5 595 70.8
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.7e-233 812.8 607 67.7
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.3e-233 812.4 593 71.2
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 2.3e-233 812.4 613 68.0
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 3.9e-233 811.6 612 70.4
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 8.7e-233 810.4 603 70.3
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 5.6e-232 807.7 592 70.6
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.8e-231 804.7 586 70.3
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 2.4e-230 802.4 593 69.8
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 2.0e-229 799.3 594 70.2
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 3.4e-229 798.5 590 68.3
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 4.5e-229 798.1 594 68.7
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.4e-227 793.1 603 67.2
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 3.2e-227 792.0 591 68.4
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 1.2e-226 790.0 592 69.6
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 2.3e-225 785.8 586 69.5
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.9e-224 782.7 589 68.6
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.8e-223 778.9 601 66.9
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.0e-221 772.7 597 68.3
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 9.9e-221 770.4 597 66.7
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 3.8e-220 768.5 597 66.7
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 5.5e-219 764.6 603 67.7
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.6e-218 763.1 586 67.1
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 4.6e-218 761.5 601 66.1
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.6e-218 761.5 605 67.1
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 1.8e-217 759.6 643 62.8
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 4.8e-215 751.5 493 81.5
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.1e-214 750.4 607 65.1
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.2e-213 746.9 607 65.1
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.8e-212 741.9 598 65.2
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 1.8e-209 733.0 616 63.0
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 7.6e-205 717.6 597 63.5
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.1e-203 713.8 522 71.1
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 6.7e-201 704.5 597 63.8
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 8.2e-199 697.6 596 63.6
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 1.2e-197 693.7 591 62.3
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.4e-195 686.8 480 72.3
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 4.2e-195 685.3 566 65.0
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.7e-173 611.3 595 57.1
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 5.6e-155 552.0 607 49.9
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 7.5e-152 541.6 600 49.7
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.0e-145 519.2 517 56.7
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 2.3e-140 503.4 599 49.1
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 2.4e-134 483.4 614 44.5
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 4.1e-126 456.1 598 46.8
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 7.3e-123 445.3 596 43.1
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 3.8e-87 326.6 209 76.1
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.1e-85 320.9 243 65.8
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 2.0e-80 304.3 325 49.8
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 7.2e-78 295.8 621 32.4
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.1e-62 245.4 202 64.9
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 2.1e-61 241.1 572 30.4
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 7.7e-56 222.6 232 54.7
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 2.4e-49 201.1 147 68.0
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.0e-48 198.0 151 70.2
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 6.4e-34 149.8 79 93.7
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 5.4e-33 146.7 79 92.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 2.7e-32 144.4 622 23.2
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.1e-30 139.0 201 42.8
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 4.3e-30 137.1 98 64.3
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.9e-18 97.8 61 70.5
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.0e-15 89.4 114 43.0
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 4.0e-12 77.4 204 37.3
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.8e-10 70.9 59 61.0
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 4.9e-10 70.5 90 43.3


User provided reference genes

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