Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p07140 Brassica napus HOM05D008462 ORTHO05D010511 9.4e-39 162.9 75 100.0
BraA07t28500Z Brassica rapa HOM05D008462 ORTHO05D010511 9.4e-39 162.9 75 100.0
BcaC06g35797 Brassica carinata HOM05D008462 ORTHO05D010511 8.8e-37 156.4 75 96.0
C07p10750 Brassica napus HOM05D008462 ORTHO05D010511 8.8e-37 156.4 75 96.0
BolC7t41541H Brassica oleracea HOM05D008462 ORTHO05D010511 8.8e-37 156.4 75 96.0
AT3G25170 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 9.7e-20 99.8 73 64.4
Sp3g22770 Schrenkiella parvula HOM05D008462 ORTHO05D010511 1.7e-19 99.0 73 65.8
AL3G40860 Arabidopsis lyrata HOM05D008462 ORTHO05D010511 1.4e-18 95.9 73 63.0
BolC7t45511H Brassica oleracea HOM05D008462 ORTHO05D010511 3.1e-18 94.7 73 74.0
BcaB06g28566 Brassica carinata HOM05D008462 ORTHO05D010511 1.2e-17 92.8 73 71.2
BcaNung02684 Brassica carinata HOM05D008462 ORTHO05D010511 2.0e-17 92.0 73 71.2
C07p50070 Brassica napus HOM05D008462 ORTHO05D010511 2.0e-17 92.0 73 71.2
Thhalv10002753m.g Eutrema salsugineum HOM05D008462 ORTHO05D010511 2.6e-17 91.7 73 61.6
BraA03t14245Z Brassica rapa HOM05D008462 ORTHO05D010511 7.7e-17 90.1 73 69.9
BcaC06g30601 Brassica carinata HOM05D008462 ORTHO05D010511 1.7e-16 89.0 71 70.4
BcaC06g30603 Brassica carinata HOM05D008462 ORTHO05D010511 8.5e-16 86.7 73 68.5
AL3G52880 Arabidopsis lyrata HOM05D008462 ORTHO05D010511 4.7e-14 80.9 73 57.5
BolC7t45509H Brassica oleracea HOM05D000817 ORTHO05D000702 8.0e-14 80.1 69 69.6
CARHR101500 Cardamine hirsuta HOM05D008462 ORTHO05D010511 5.2e-13 77.4 70 54.3
C05p61610 Brassica napus HOM05D008462 ORTHO05D010511 8.8e-13 76.6 76 60.5
AL3G52890 Arabidopsis lyrata HOM05D008462 ORTHO05D010511 1.5e-12 75.9 73 54.8
AT2G19030 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 1.5e-12 75.9 73 54.8
AT2G19045 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 1.5e-12 75.9 73 56.2
AT2G19040 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 4.4e-12 74.3 73 54.8
CARHR101510 Cardamine hirsuta HOM05D008462 ORTHO05D010511 7.5e-12 73.6 72 54.2
BraA05t22955Z Brassica rapa HOM05D008462 ORTHO05D010511 9.7e-12 73.2 75 60.0
Carub.0003s3328 Capsella rubella HOM05D008462 ORTHO05D010511 2.8e-11 71.6 73 50.7
Aa31sc95G170 Aethionema arabicum HOM05D008462 ORTHO05D010511 3.7e-11 71.2 75 48.0
Sp3g32450 Schrenkiella parvula HOM05D008462 ORTHO05D010511 4.8e-11 70.9 73 47.9
Carub.0003s3341 Capsella rubella HOM05D008462 ORTHO05D010511 6.3e-11 70.5 73 49.3
AT2G19020 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 1.4e-10 69.3 73 53.4
BolC5t34818H Brassica oleracea HOM05D008462 ORTHO05D010511 3.1e-10 68.2 88 50.0
AL3G40850 Arabidopsis lyrata HOM05D008462 ORTHO05D010511 4.1e-10 67.8 72 48.6
Thhalv10023138m.g Eutrema salsugineum HOM05D008462 ORTHO05D010511 4.1e-10 67.8 70 45.7
Thhalv10026849m.g Eutrema salsugineum HOM05D008462 ORTHO05D010511 4.1e-10 67.8 75 44.0
Carub.0003s2550 Capsella rubella HOM05D008462 ORTHO05D010511 7.0e-10 67.0 72 47.2
THA.LOC109116491 Tarenaya hassleriana HOM05D008462 ORTHO05D010511 9.1e-10 66.6 49 57.1
C07p01380 Brassica napus HOM05D008462 ORTHO05D010511 1.2e-09 66.2 77 53.2
CARHR109540 Cardamine hirsuta HOM05D008462 ORTHO05D010511 1.2e-09 66.2 72 48.6
C05p42410 Brassica napus HOM05D046735 ORTHO05D010511 2.7e-09 65.1 73 56.2
Eucgr.E01763 Eucalyptus grandis HOM05D008462 ORTHO05D010511 2.7e-09 65.1 68 44.1
C05p61600 Brassica napus HOM05D008462 ORTHO05D010511 3.5e-09 64.7 77 53.2
AT3G25165 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 4.5e-09 64.3 72 48.6
Eucgr.L02598 Eucalyptus grandis HOM05D009215 ORTHO05D010511 5.9e-09 63.9 68 44.1
BcaB07g31637 Brassica carinata HOM05D008462 ORTHO05D010511 7.7e-09 63.5 73 47.9
Cpa.g.c26396.1 Carica papaya HOM05D018895 ORTHO05D010851 7.7e-09 63.5 70 45.7
Cpa.g.c34278 Carica papaya HOM05D018895 ORTHO05D010851 7.7e-09 63.5 70 45.7
Cpa.g.sc8.111 Carica papaya HOM05D018895 ORTHO05D010851 7.7e-09 63.5 73 43.8
Cpa.g.sc8.112 Carica papaya HOM05D018895 ORTHO05D010851 7.7e-09 63.5 70 45.7
Eucgr.L02597 Eucalyptus grandis HOM05D009215 ORTHO05D010511 1.7e-08 62.4 68 44.1
CARHR101490 Cardamine hirsuta HOM05D008462 ORTHO05D010511 3.8e-08 61.2 76 44.7
Nn1g08163 Nelumbo nucifera HOM05D057550 ORTHO05D010511 3.8e-08 61.2 75 48.0
AL9U11140 Arabidopsis lyrata HOM05D008462 ORTHO05D010511 5.0e-08 60.8 77 44.2
BcaB03g16703 Brassica carinata HOM05D000065 ORTHO05D000162 1.5e-07 59.3 45 57.8
CARHR105300 Cardamine hirsuta HOM05D008462 ORTHO05D010511 1.5e-07 59.3 53 50.9
Eucgr.E01762 Eucalyptus grandis HOM05D009215 ORTHO05D010511 1.9e-07 58.9 68 42.6
BcaC04g22878 Brassica carinata HOM05D008462 ORTHO05D010511 3.2e-07 58.2 70 42.9
C09p14320 Brassica napus HOM05D008462 ORTHO05D010511 3.2e-07 58.2 70 42.9
BolC9t54335H Brassica oleracea HOM05D008462 ORTHO05D010511 3.2e-07 58.2 70 42.9
Sp3g22760 Schrenkiella parvula HOM05D008462 ORTHO05D010511 3.2e-07 58.2 56 48.2
COL.COLO4_16121 Corchorus olitorius HOM05D009215 ORTHO05D010851 4.2e-07 57.8 69 42.0
Eucgr.L02596 Eucalyptus grandis HOM05D008462 ORTHO05D010511 4.2e-07 57.8 66 43.9
Sed0000002 Sechium edule HOM05D010794 ORTHO05D013590 4.2e-07 57.8 76 42.1
Gohir.A03G013100 Gossypium hirsutum HOM05D009215 ORTHO05D010851 7.2e-07 57.0 72 38.9
Gohir.A12G235600 Gossypium hirsutum HOM05D009215 ORTHO05D010851 1.2e-06 56.2 72 40.3
Cpa.g.sc8.114 Carica papaya HOM05D018895 ORTHO05D010851 2.1e-06 55.5 69 40.6
AT4G13075 Arabidopsis thaliana HOM05D008462 ORTHO05D010511 2.7e-06 55.1 72 41.7
Gorai.003G164100 Gossypium raimondii HOM05D009215 ORTHO05D010851 3.6e-06 54.7 72 37.5
Duzib138G0384 Durio zibethinus HOM05D009215 ORTHO05D010851 6.1e-06 53.9 41 56.1
Gorai.005G192700 Gossypium raimondii HOM05D009215 ORTHO05D010851 6.1e-06 53.9 72 40.3
Cpa.g.sc8.113 Carica papaya HOM05D018895 ORTHO05D010851 8.0e-06 53.5 72 40.3
Thhalv10002869m.g Eutrema salsugineum HOM05D008462 ORTHO05D010511 8.0e-06 53.5 73 47.9


User provided reference genes

Program Settings