Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 2.6e-77 292.0 148 100.0
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 6.8e-33 144.4 85 88.2
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 1.2e-32 143.7 78 93.6
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 7.5e-32 141.0 84 89.3
BraA07t28493Z Brassica rapa HOM05D019182 ORTHO05D016805 1.6e-29 133.3 65 100.0
C02p58540 Brassica napus HOM05D019182 ORTHO05D016805 3.3e-27 125.6 65 95.4
C07p27270 Brassica napus HOM05D019182 ORTHO05D016805 3.3e-27 125.6 65 95.4
BolC2t11914H Brassica oleracea HOM05D019182 ORTHO05D016805 3.3e-27 125.6 65 95.4
BolC7t43255H Brassica oleracea HOM05D019182 ORTHO05D016805 3.3e-27 125.6 65 95.4
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 1.8e-25 119.8 84 76.2
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 1.8e-25 119.8 84 76.2
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 1.8e-25 119.8 84 76.2
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 3.1e-25 119.0 81 77.8
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 3.1e-25 119.0 81 77.8
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 3.4e-24 115.5 84 73.8
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 9.8e-24 114.0 81 74.1
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 9.8e-24 114.0 84 71.4
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 2.9e-23 112.5 81 72.8
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 4.9e-23 111.7 81 71.6
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 6.4e-23 111.3 81 71.6
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 6.4e-23 111.3 81 71.6
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 3.2e-22 109.0 80 70.0
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 3.2e-22 109.0 80 70.0
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 3.2e-22 109.0 80 70.0
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 3.2e-22 109.0 80 70.0
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 3.2e-22 109.0 80 70.0
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 3.2e-22 109.0 80 70.0
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 7.0e-22 107.8 57 94.7
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 2.1e-21 106.3 81 69.1
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 2.7e-21 105.9 84 66.7
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 3.5e-21 105.5 57 93.0
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 3.5e-21 105.5 81 67.9
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 4.6e-21 105.1 80 67.5
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 6.0e-21 104.8 77 71.4
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 6.0e-21 104.8 81 67.9
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 6.0e-21 104.8 81 66.7
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 7.8e-21 104.4 92 64.1
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 1.0e-20 104.0 77 68.8
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 1.3e-20 103.6 77 68.8
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 1.3e-20 103.6 81 66.7
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 1.7e-20 103.2 79 67.1
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 1.7e-20 103.2 81 64.2
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 2.3e-20 102.8 81 65.4
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 2.3e-20 102.8 81 65.4
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 2.3e-20 102.8 77 68.8
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 3.0e-20 102.4 84 61.9
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 3.0e-20 102.4 81 64.2
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 3.0e-20 102.4 81 65.4
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 3.9e-20 102.1 79 65.8
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 3.9e-20 102.1 77 67.5
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 3.9e-20 102.1 77 66.2
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 5.1e-20 101.7 81 63.0
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 5.1e-20 101.7 81 65.4
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 6.6e-20 101.3 83 63.9
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 6.6e-20 101.3 76 67.1
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 6.6e-20 101.3 81 61.7
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 8.6e-20 100.9 84 65.5
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 8.6e-20 100.9 81 65.4
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 8.6e-20 100.9 79 67.1
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 8.6e-20 100.9 77 67.5
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 1.1e-19 100.5 81 63.0
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 1.1e-19 100.5 81 61.7
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 1.5e-19 100.1 77 67.5
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 1.5e-19 100.1 77 67.5
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 1.5e-19 100.1 77 67.5
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 1.5e-19 100.1 77 67.5
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 1.9e-19 99.8 81 64.2
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 1.9e-19 99.8 81 65.4
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 1.9e-19 99.8 81 65.4
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 2.5e-19 99.4 81 64.2
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 2.5e-19 99.4 81 64.2
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 2.5e-19 99.4 77 66.2
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 3.3e-19 99.0 81 64.2
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 3.3e-19 99.0 81 64.2
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 4.3e-19 98.6 81 61.7
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 4.3e-19 98.6 81 63.0
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 4.3e-19 98.6 81 65.4
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 4.3e-19 98.6 81 61.7
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 4.3e-19 98.6 81 63.0
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 5.6e-19 98.2 81 63.0
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 5.6e-19 98.2 76 64.5
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 5.6e-19 98.2 79 67.1
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 7.3e-19 97.8 81 63.0
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 7.3e-19 97.8 81 61.7
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 9.5e-19 97.4 76 67.1
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 9.5e-19 97.4 80 63.8
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 9.5e-19 97.4 81 63.0
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 9.5e-19 97.4 81 63.0
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 9.5e-19 97.4 81 61.7
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 1.2e-18 97.1 81 63.0
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 1.6e-18 96.7 67 74.6
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 1.6e-18 96.7 81 61.7
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 1.6e-18 96.7 81 61.7
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 2.1e-18 96.3 81 58.0
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 2.8e-18 95.9 100 52.0
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 4.7e-18 95.1 83 61.4
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 4.7e-18 95.1 83 61.4
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 4.7e-18 95.1 81 63.0
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 6.2e-18 94.7 81 61.7
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 6.2e-18 94.7 81 61.7
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 8.1e-18 94.4 96 56.2
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 8.1e-18 94.4 81 60.5
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 1.1e-17 94.0 75 64.0
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 1.1e-17 94.0 80 61.2
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 1.1e-17 94.0 72 69.4
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 2.3e-17 92.8 77 59.7
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 1.2e-16 90.5 68 72.1
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 1.2e-16 90.5 77 59.7
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 4.9e-15 85.1 63 71.4
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 1.4e-14 83.6 83 55.4
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 4.1e-14 82.0 75 66.7
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 5.4e-14 81.6 61 63.9
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 1.2e-13 80.5 62 64.5
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 1.3e-12 77.0 77 63.6
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 1.3e-12 77.0 85 47.1
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 8.6e-12 74.3 61 60.7
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 8.6e-12 74.3 61 60.7
BolC5t30890H Brassica oleracea HOM05D000263 ORTHO05D028311 1.9e-11 73.2 40 92.5
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 4.3e-11 72.0 122 39.3
C08p15110 Brassica napus HOM05D000263 ORTHO05D028311 7.3e-11 71.2 40 90.0
BolC8t49141H Brassica oleracea HOM05D000263 ORTHO05D028311 7.3e-11 71.2 40 90.0
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 2.1e-10 69.7 79 41.8
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 1.4e-09 67.0 79 40.5
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 3.1e-09 65.9 44 75.0
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 3.1e-09 65.9 51 56.9
CBR_g51472 Chara braunii HOM05D006721 ORTHO05D000476 1.5e-08 63.5 75 41.3
A09p43190 Brassica napus HOM05D024383 ORTHO05D024652 9.9e-08 60.8 46 67.4
MCO10G233 Micromonas commoda HOM05D006721 ORTHO05D000476 1.7e-07 60.1 60 46.7
BcaC06g35701 Brassica carinata HOM05D000809 ORTHO05D001196 8.4e-07 57.8 76 46.1
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 3.2e-06 55.8 81 42.0
Cre02.g105950 Chlamydomonas reinhardtii HOM05D006721 ORTHO05D000476 4.2e-06 55.5 64 42.2


User provided reference genes

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