Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 7.4e-130 468.4 533 100.0
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 7.7e-127 458.4 536 98.3
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 1.1e-125 454.5 536 98.3
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 1.1e-125 454.5 536 98.3
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 1.8e-123 447.2 533 97.6
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 1.7e-118 430.6 536 95.5
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 8.2e-105 385.2 540 90.4
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 4.5e-103 379.4 536 89.6
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 5.7e-98 362.5 212 83.0
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 6.3e-97 359.0 212 82.1
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 1.2e-95 354.8 213 80.3
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 1.9e-93 347.4 213 79.3
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 4.5e-87 326.2 307 70.0
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 3.3e-85 320.1 210 71.4
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.7e-78 297.7 211 69.7
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 4.9e-41 173.3 211 45.0
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 2.1e-39 167.9 198 46.0
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 6.0e-39 166.4 195 48.7
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 1.3e-38 165.2 197 44.7
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 1.7e-38 164.9 194 45.9
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 2.3e-38 164.5 183 48.6
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 2.3e-38 164.5 195 45.1
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 8.7e-38 162.5 196 44.9
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 8.7e-38 162.5 179 48.6
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.5e-37 161.8 198 44.9
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 1.5e-37 161.8 199 44.2
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 1.9e-37 161.4 177 47.5
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 7.3e-37 159.5 187 48.7
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 7.3e-37 159.5 187 48.7
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 2.1e-36 157.9 198 45.5
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 6.2e-36 156.4 182 42.9
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 1.4e-35 155.2 196 45.4
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 1.8e-35 154.8 203 43.3
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 4.0e-35 153.7 207 42.5
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 6.9e-35 152.9 210 40.5
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 2.6e-34 151.0 210 40.5
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 4.9e-33 146.7 207 41.5
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 1.1e-32 145.6 204 40.2
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 1.1e-32 145.6 182 42.9
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 1.4e-32 145.2 210 41.0
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 1.9e-32 144.8 200 40.0
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 2.4e-32 144.4 161 48.4
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 5.5e-32 143.3 215 41.4
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 1.6e-31 141.7 179 43.6
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 2.1e-31 141.4 203 41.9
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 3.5e-31 140.6 212 39.6
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 4.6e-31 140.2 185 43.2
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 7.9e-31 139.4 177 44.6
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 1.0e-30 139.0 182 46.2
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.8e-30 138.3 170 45.3
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.3e-30 137.9 184 44.0
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 3.9e-30 137.1 194 42.3
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 5.1e-30 136.7 215 40.0
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 8.7e-30 136.0 185 45.9
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 8.7e-30 136.0 185 45.9
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 1.5e-29 135.2 182 42.3
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 1.5e-29 135.2 146 47.9
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.5e-29 135.2 176 43.2
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 3.3e-29 134.0 205 37.6
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 4.3e-29 133.7 185 41.6
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 5.6e-29 133.3 212 41.0
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 9.6e-29 132.5 203 37.9
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 1.3e-28 132.1 133 51.9
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 1.6e-28 131.7 182 40.1
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 2.1e-28 131.3 117 53.8
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 2.1e-28 131.3 176 43.2
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 2.8e-28 131.0 177 42.4
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 3.7e-28 130.6 144 49.3
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 1.1e-27 129.0 194 39.7
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 1.4e-27 128.6 177 44.1
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.4e-27 128.6 205 39.5
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 5.3e-27 126.7 188 44.7
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 5.3e-27 126.7 138 47.1
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 1.2e-26 125.6 189 40.2
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 1.5e-26 125.2 114 53.5
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 3.4e-26 124.0 134 49.3
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 7.6e-26 122.9 110 52.7
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 1.3e-25 122.1 223 36.3
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 1.3e-25 122.1 213 37.1
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 2.2e-25 121.3 178 41.6
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 2.9e-25 120.9 134 48.5
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 6.5e-25 119.8 187 40.6
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 8.4e-25 119.4 178 38.8
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 1.1e-24 119.0 181 40.3
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.1e-24 119.0 134 46.3
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.4e-24 118.6 107 52.3
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 1.9e-24 118.2 171 39.2
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 2.5e-24 117.9 154 43.5
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 4.2e-24 117.1 132 46.2
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 9.3e-24 115.9 186 39.2
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 1.2e-23 115.5 178 38.2
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 1.2e-23 115.5 178 38.8
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 3.5e-23 114.0 216 35.6
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 7.9e-23 112.8 177 37.9
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.3e-22 112.1 216 35.6
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 1.3e-22 112.1 185 38.9
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 2.3e-22 111.3 91 57.1
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 2.3e-22 111.3 188 34.6
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 7.4e-21 106.3 118 43.2
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 3.7e-20 104.0 161 38.5
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 1.1e-19 102.4 192 34.4
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 1.2e-18 99.0 135 44.4
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 4.5e-18 97.1 218 32.6
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 5.9e-18 96.7 218 32.6
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 1.7e-17 95.1 200 35.0
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 2.9e-17 94.4 187 34.2
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 2.9e-17 94.4 187 34.2
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 3.8e-17 94.0 187 33.7
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 5.0e-17 93.6 162 35.2
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 1.9e-16 91.7 166 35.5
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 3.2e-16 90.9 190 34.2
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 5.5e-16 90.1 107 44.9
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 2.7e-15 87.8 176 35.2
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 1.3e-14 85.5 155 36.8
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 3.0e-14 84.3 190 31.6
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 2.4e-11 74.7 98 42.9
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 6.7e-06 56.6 138 34.8


User provided reference genes

Program Settings