Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 0.0e+00 1296.6 726 100.0
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 0.0e+00 1245.7 744 95.2
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 0.0e+00 1230.3 769 91.9
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 0.0e+00 1142.5 659 98.2
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 0.0e+00 1132.5 684 94.9
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 0.0e+00 1092.8 659 93.0
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 1.3e-294 1016.1 660 82.9
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 3.2e-293 1011.5 659 82.7
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 1.6e-289 999.2 659 81.3
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 7.6e-287 990.3 659 81.0
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 3.3e-274 948.3 659 78.3
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 3.7e-241 838.6 661 72.2
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 1.3e-217 760.4 663 65.8
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 5.0e-214 748.4 510 79.6
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 9.6e-173 611.3 674 53.0
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 4.9e-169 599.0 670 53.6
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 3.2e-168 596.3 677 52.1
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 2.1e-167 593.6 668 50.9
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 3.0e-166 589.7 673 51.6
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 1.6e-164 583.9 677 52.3
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 6.3e-164 582.0 674 50.3
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 1.4e-163 580.9 690 50.1
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 3.1e-163 579.7 673 54.4
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 3.4e-162 576.2 678 50.6
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 3.4e-162 576.2 682 50.4
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 7.6e-162 575.1 669 50.7
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 1.3e-161 574.3 681 51.5
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 2.2e-161 573.5 669 53.5
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 2.2e-161 573.5 669 53.5
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 8.5e-161 571.6 681 51.4
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 1.0e-158 564.7 674 49.4
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 6.7e-158 562.0 667 50.8
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 4.3e-157 559.3 673 50.2
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 2.2e-156 557.0 676 48.8
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 2.8e-156 556.6 670 49.7
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 2.8e-156 556.6 676 49.0
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 2.8e-156 556.6 664 49.5
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 1.4e-155 554.3 669 49.9
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 9.0e-155 551.6 681 49.6
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 1.2e-154 551.2 685 48.5
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 2.6e-154 550.1 705 47.0
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.0e-153 548.1 681 49.5
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.0e-153 548.1 728 46.6
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 5.0e-153 545.8 664 48.5
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 1.4e-152 544.3 681 49.9
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 1.9e-152 543.9 634 50.3
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 1.2e-151 541.2 673 49.6
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 1.4e-150 537.7 666 49.2
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 2.6e-149 533.5 701 49.1
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 7.4e-149 531.9 661 49.9
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 9.7e-149 531.6 693 47.2
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.7e-148 530.8 679 48.5
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 1.1e-147 528.1 667 48.3
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 1.4e-147 527.7 676 47.9
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 2.6e-146 523.5 667 46.6
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 3.8e-145 519.6 656 48.3
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 5.0e-145 519.2 685 47.2
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 5.0e-145 519.2 669 47.1
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 4.2e-144 516.2 669 46.9
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 5.5e-144 515.8 673 47.8
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 5.5e-144 515.8 669 46.5
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 6.1e-143 512.3 672 46.7
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.4e-142 511.1 810 41.4
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 8.8e-142 508.4 672 47.5
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 3.3e-141 506.5 677 46.5
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 4.1e-139 499.6 658 48.5
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.0e-137 495.0 668 45.7
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 8.5e-137 491.9 671 43.7
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 1.5e-136 491.1 551 51.2
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 2.5e-136 490.3 709 46.5
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 8.0e-135 485.3 669 46.5
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 1.7e-132 477.6 786 40.8
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 1.8e-131 474.2 693 44.7
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 1.8e-131 474.2 624 47.9
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.0e-129 468.4 625 47.0
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 1.9e-128 464.2 656 46.2
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 6.1e-127 459.1 617 48.8
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 9.8e-125 451.8 680 43.4
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 2.0e-122 444.1 668 41.9
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 5.9e-122 442.6 668 41.3
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 5.5e-120 436.0 535 47.1
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 2.1e-119 434.1 621 44.8
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 6.1e-119 432.6 514 50.2
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 3.0e-118 430.3 679 40.9
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 4.4e-117 426.4 478 52.1
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 8.3e-116 422.2 498 49.2
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 1.1e-104 385.2 660 42.1
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 5.6e-104 382.9 450 51.8
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.2e-103 381.7 688 37.9
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 5.8e-101 372.9 675 37.9
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 1.3e-100 371.7 500 46.2
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 4.6e-98 363.2 675 36.7
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 1.1e-96 358.6 725 35.0
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 2.5e-96 357.5 541 42.9
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 1.8e-94 351.3 692 36.0
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 8.9e-94 349.0 704 33.9
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.1e-91 342.0 688 35.2
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 1.2e-90 338.6 513 42.3
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 9.5e-88 328.9 667 34.9
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 5.2e-86 323.2 451 49.9
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 6.6e-81 306.2 438 44.1
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 1.7e-68 265.0 608 31.9
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 7.9e-66 256.1 216 63.0
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 3.5e-58 230.7 862 27.8
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 2.1e-50 204.9 188 60.1
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 5.1e-49 200.3 216 51.9
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 1.6e-47 195.3 351 41.9
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 3.1e-46 191.0 835 26.8
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 2.2e-44 184.9 779 27.2
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 5.0e-44 183.7 153 63.4
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 5.5e-43 180.3 289 42.6
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 4.6e-42 177.2 136 69.9
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.8e-41 175.3 308 42.5
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.5e-32 145.6 222 41.4
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 9.1e-30 136.3 165 46.7
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 1.7e-23 115.5 185 39.5
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 1.1e-22 112.8 101 59.4
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 1.4e-22 112.5 340 28.5
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 3.5e-21 107.8 78 70.5
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 4.2e-19 100.9 94 60.6
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 3.6e-18 97.8 91 61.5
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.2e-17 94.0 90 62.2
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 3.8e-12 77.8 56 69.6
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 1.4e-09 69.3 90 44.4
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 6.3e-07 60.5 46 63.0
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 4.1e-06 57.8 73 46.6


User provided reference genes

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