Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 3.2e-156 555.1 288 100.0
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 3.2e-156 555.1 288 100.0
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 8.3e-144 513.8 293 92.8
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 8.3e-144 513.8 293 92.8
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 4.9e-128 461.5 293 86.3
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 3.2e-127 458.8 316 79.7
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 4.0e-122 441.8 309 78.6
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 4.0e-122 441.8 309 78.6
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 4.0e-122 441.8 309 78.6
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 2.6e-121 439.1 311 77.8
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 5.4e-119 431.4 310 77.4
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 4.6e-118 428.3 318 75.8
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 1.2e-115 420.2 294 78.2
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 2.1e-115 419.5 295 78.0
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 3.8e-112 408.7 311 74.6
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 2.7e-110 402.5 306 74.8
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 1.7e-104 383.3 310 69.4
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 8.4e-104 380.9 301 72.8
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 4.5e-89 332.0 317 62.1
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 1.1e-79 300.8 298 63.8
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 1.1e-79 300.8 298 63.8
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 3.3e-76 289.3 318 56.9
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 6.7e-69 265.0 327 51.4
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 1.8e-66 256.9 209 71.8
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 4.5e-65 252.3 301 50.2
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 7.9e-62 241.5 333 48.9
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 1.0e-61 241.1 307 48.9
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.8e-61 240.4 294 47.6
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 2.3e-61 240.0 294 48.0
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 3.0e-61 239.6 305 47.5
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 3.0e-61 239.6 312 50.3
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 3.0e-61 239.6 312 50.6
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 8.8e-61 238.0 323 46.7
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.5e-60 237.3 312 50.6
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 3.3e-60 236.1 300 48.7
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 5.7e-60 235.3 323 45.5
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 1.7e-59 233.8 343 46.1
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.2e-59 233.4 323 45.2
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 7.0e-58 228.4 301 48.2
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 1.2e-57 227.6 328 47.6
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 1.2e-57 227.6 313 46.3
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 1.2e-57 227.6 312 46.8
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 1.6e-57 227.3 312 46.2
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 7.7e-57 224.9 156 82.7
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 7.7e-57 224.9 313 44.4
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 1.0e-56 224.6 312 47.8
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.0e-56 224.6 319 45.8
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.2e-56 223.4 307 46.3
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 2.9e-56 223.0 314 45.2
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 2.9e-56 223.0 347 43.2
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 3.8e-56 222.6 310 45.5
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.8e-56 222.6 321 43.9
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 5.0e-56 222.2 296 47.0
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 8.5e-56 221.5 306 46.4
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 3.2e-55 219.5 294 47.3
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 4.2e-55 219.2 306 44.8
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 5.5e-55 218.8 306 46.7
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 9.4e-55 218.0 313 45.4
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 1.2e-54 217.6 303 45.2
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 2.1e-54 216.9 297 45.1
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 2.1e-54 216.9 246 52.0
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 2.7e-54 216.5 301 45.2
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 3.6e-54 216.1 300 46.3
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 4.7e-54 215.7 303 46.2
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 6.1e-54 215.3 299 44.8
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 1.4e-53 214.2 306 44.1
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.4e-53 214.2 310 43.9
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.8e-53 213.8 306 45.4
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 3.0e-53 213.0 300 46.3
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 4.0e-53 212.6 310 46.1
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 1.5e-52 210.7 299 45.5
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 2.6e-52 209.9 301 44.2
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 3.3e-52 209.5 321 43.0
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 3.3e-52 209.5 298 46.3
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 4.4e-52 209.1 345 42.3
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 7.5e-52 208.4 293 46.1
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 7.5e-52 208.4 305 45.2
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 9.7e-52 208.0 309 44.3
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 1.7e-51 207.2 305 45.2
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.7e-51 207.2 301 43.2
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 2.2e-51 206.8 307 44.6
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 2.2e-51 206.8 305 46.2
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 3.7e-51 206.1 365 39.7
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.1e-50 203.0 293 43.0
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 7.0e-50 201.8 310 45.2
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 1.6e-49 200.7 296 44.9
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 2.0e-49 200.3 306 44.4
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 2.0e-49 200.3 312 42.0
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.0e-49 200.3 290 43.4
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 4.5e-49 199.1 302 44.4
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 4.5e-49 199.1 301 43.2
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 7.7e-49 198.4 312 43.6
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 7.7e-49 198.4 298 43.6
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 2.2e-48 196.8 291 43.0
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 2.9e-48 196.4 304 40.1
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 3.8e-48 196.1 298 43.6
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 5.0e-48 195.7 293 42.3
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 5.0e-48 195.7 299 43.8
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.1e-47 194.5 294 41.8
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 1.5e-47 194.1 289 43.3
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 1.9e-47 193.7 312 42.9
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.2e-47 193.0 223 48.0
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 3.2e-47 193.0 299 43.5
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 5.5e-47 192.2 311 41.5
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 5.5e-47 192.2 282 44.7
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 1.6e-46 190.7 303 42.9
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 2.7e-46 189.9 212 51.9
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 3.6e-46 189.5 298 43.6
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 3.6e-46 189.5 314 40.4
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.6e-46 189.5 293 43.0
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 4.7e-46 189.1 299 41.1
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 6.1e-46 188.7 311 42.8
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 1.4e-45 187.6 230 48.3
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 3.0e-45 186.4 308 41.6
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 4.0e-45 186.0 323 39.3
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 5.2e-45 185.7 300 43.3
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 1.5e-44 184.1 221 49.8
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 2.6e-44 183.3 303 40.6
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 3.4e-44 183.0 312 40.1
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 5.7e-44 182.2 160 63.8
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 5.7e-44 182.2 317 40.4
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 7.5e-44 181.8 308 39.3
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 2.8e-43 179.9 307 38.8
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 8.3e-43 178.3 223 47.5
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 1.4e-42 177.6 308 40.6
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 1.2e-41 174.5 232 46.6
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 3.5e-41 172.9 249 41.8
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 6.5e-40 168.7 288 41.0
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 4.2e-39 166.0 297 39.1
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 9.5e-39 164.9 272 42.6
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 3.6e-38 162.9 365 35.1
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.8e-35 153.3 326 34.7
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 1.4e-34 151.0 323 35.0
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 5.0e-32 142.5 297 35.7
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 1.4e-29 134.4 171 48.0
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 1.8e-29 134.0 266 36.5
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 3.4e-28 129.8 160 51.2
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 4.9e-27 125.9 366 31.1
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.6e-25 119.4 379 29.6
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 5.6e-23 112.5 361 31.6
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 3.6e-22 109.8 84 71.4
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.8e-20 101.7 345 29.3
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.9e-19 100.1 357 30.8
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 6.4e-19 99.0 333 31.5
BcaB07g31779 Brassica carinata HOM05D001401 ORTHO05D006368 1.0e-16 91.7 93 63.4
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 1.5e-15 87.8 125 44.0
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.5e-15 87.0 145 42.8
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.5e-15 85.1 151 35.8
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.8e-13 80.9 98 49.0
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 2.3e-13 80.5 254 33.5
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 1.5e-12 77.8 129 38.8
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.9e-10 70.9 330 27.3
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 5.4e-10 69.3 87 44.8
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.7e-08 64.3 154 33.1
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 3.0e-08 63.5 57 61.4
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.3e-07 60.1 55 54.5
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 7.3e-07 58.9 178 28.7
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.2e-06 58.2 276 27.5
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.2e-06 58.2 102 38.2
FAN15G3283 Fragaria x ananassa HOM05D001401 ORTHO05D006368 8.1e-06 55.5 82 42.7


User provided reference genes

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