Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 2.5e-168 595.5 338 100.0
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 6.3e-167 590.9 338 99.1
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 6.3e-167 590.9 338 99.1
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 6.3e-167 590.9 338 99.1
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 5.3e-166 587.8 338 98.8
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 3.3e-144 515.4 338 84.6
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 3.7e-143 511.9 338 84.0
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 1.4e-142 510.0 338 84.0
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 1.9e-139 499.6 339 84.1
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 9.4e-139 497.3 339 83.8
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 9.4e-139 497.3 370 78.6
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 1.2e-136 490.3 362 76.0
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 2.6e-136 489.2 342 82.2
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 4.8e-135 485.0 339 80.5
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 2.5e-131 472.6 383 73.6
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 5.5e-131 471.5 353 76.5
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 1.8e-129 466.5 354 69.5
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 1.5e-112 410.2 346 75.1
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 2.9e-111 406.0 339 72.9
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 9.5e-107 391.0 341 62.8
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.6e-90 337.0 344 54.4
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.8e-90 336.3 345 54.2
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 6.2e-90 335.1 344 54.1
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 1.4e-89 334.0 343 58.0
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 2.4e-89 333.2 346 56.1
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.5e-88 330.5 345 58.6
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 4.4e-88 328.9 345 56.8
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 7.6e-88 328.2 337 59.9
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 2.9e-87 326.2 347 58.5
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 6.4e-87 325.1 350 56.0
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 4.2e-86 322.4 347 54.5
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 7.1e-86 321.6 328 59.5
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 2.1e-85 320.1 365 58.1
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 2.7e-85 319.7 342 55.8
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.5e-85 319.3 345 51.6
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 7.8e-85 318.2 340 59.7
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 1.3e-84 317.4 350 52.9
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.7e-84 317.0 345 53.9
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 6.6e-84 315.1 343 56.6
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 8.7e-84 314.7 339 56.0
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.6e-82 310.5 337 57.3
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 1.4e-81 307.4 351 48.1
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.8e-81 307.0 345 47.2
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 2.0e-80 303.5 342 54.7
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 2.6e-80 303.1 315 56.2
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 3.4e-80 302.8 348 51.1
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 3.4e-80 302.8 350 56.0
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 4.5e-80 302.4 342 52.0
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 5.8e-80 302.0 347 56.5
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 7.6e-80 301.6 348 54.0
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 9.9e-80 301.2 357 54.9
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.3e-79 300.8 342 45.9
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.7e-79 300.4 354 55.9
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 2.9e-79 299.7 354 55.9
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 4.9e-79 298.9 341 56.3
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 1.4e-78 297.4 348 50.6
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 3.2e-78 296.2 345 49.3
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 3.2e-78 296.2 347 49.6
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 4.2e-78 295.8 342 50.3
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 7.1e-78 295.0 343 45.2
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 9.3e-78 294.7 338 56.8
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 2.1e-77 293.5 346 49.1
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 6.0e-77 292.0 347 49.6
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.8e-76 290.4 349 47.6
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 3.9e-76 289.3 352 50.3
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 3.9e-76 289.3 347 46.1
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 3.9e-76 289.3 345 51.3
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 5.1e-76 288.9 338 48.2
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 8.7e-76 288.1 342 52.6
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 8.7e-76 288.1 343 51.6
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 1.5e-75 287.3 345 50.1
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 4.3e-75 285.8 348 50.6
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 9.6e-75 284.6 339 50.7
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 1.6e-74 283.9 347 48.7
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 1.6e-74 283.9 341 49.0
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 3.7e-74 282.7 357 52.9
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 4.0e-73 279.3 344 45.6
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 6.9e-73 278.5 386 50.0
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 2.6e-72 276.6 328 50.0
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 2.6e-72 276.6 343 50.7
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 4.5e-72 275.8 337 51.9
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 6.4e-71 271.9 355 51.0
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.9e-70 270.4 347 45.5
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 2.7e-69 266.5 344 48.8
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 1.8e-68 263.8 333 48.9
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 1.1e-67 261.2 347 47.0
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 2.5e-67 260.0 342 51.2
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 9.6e-67 258.1 372 48.9
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 1.3e-66 257.7 316 45.9
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 1.3e-66 257.7 348 46.6
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 1.6e-66 257.3 336 44.3
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 1.8e-65 253.8 287 50.9
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 2.4e-65 253.4 327 45.6
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.4e-65 253.4 337 42.1
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 3.1e-65 253.1 336 44.9
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 5.3e-65 252.3 337 41.8
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.2e-64 251.1 349 41.3
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.5e-64 249.2 337 41.8
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 1.7e-63 247.3 344 42.4
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 1.9e-62 243.8 345 49.3
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.2e-61 241.1 349 39.5
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.7e-61 240.0 337 41.8
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 8.7e-60 235.0 319 45.8
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 3.1e-57 226.5 334 42.8
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 7.6e-56 221.9 370 41.9
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 5.0e-55 219.2 277 52.3
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 1.1e-51 208.0 324 38.9
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 1.9e-51 207.2 335 39.4
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.1e-49 201.4 346 42.2
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 2.2e-47 193.7 337 35.9
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 1.0e-44 184.9 392 34.9
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 2.2e-42 177.2 323 38.1
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 2.9e-39 166.8 132 59.1
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.4e-38 164.5 253 37.9
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 4.7e-37 159.5 173 48.0
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 1.1e-35 154.8 116 64.7
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 1.5e-35 154.5 126 57.9
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 5.0e-31 139.4 174 48.3
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 7.5e-27 125.6 148 39.9
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 1.1e-22 111.7 317 34.7
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 9.4e-22 108.6 107 49.5
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.7e-21 106.3 102 49.0
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.0e-20 105.1 318 29.2
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 3.0e-20 103.6 318 28.6
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 2.6e-19 100.5 148 37.8
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 3.4e-19 100.1 158 40.5
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 1.0e-15 88.6 352 26.1
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 9.8e-11 72.0 63 50.8
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 1.1e-09 68.6 56 53.6
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 6.6e-07 59.3 94 38.3
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 7.3e-06 55.8 84 39.3


User provided reference genes

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