Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p04180 Brassica napus HOM05D020143 ORTHO05D033573 1.4e-44 182.6 93 100.0
BraA07t28207Z Brassica rapa HOM05D020143 ORTHO05D033573 1.4e-44 182.6 93 100.0
BolC9t59946H Brassica oleracea HOM05D020143 ORTHO05D033573 2.0e-43 178.7 93 97.8
BraA10t45156Z Brassica rapa HOM05D020143 ORTHO05D108613 6.6e-42 173.7 93 96.8
C09p71710 Brassica napus HOM05D020143 ORTHO05D100342 2.3e-34 148.7 93 89.2
BolC9t59923H Brassica oleracea HOM05D000571 ORTHO05D000435 3.0e-26 121.7 70 92.9
C09p71990 Brassica napus HOM05D020143 ORTHO05D101931 3.5e-19 98.2 88 62.5
BcaB01g05737 Brassica carinata HOM05D000493 ORTHO05D001638 7.1e-12 73.9 51 72.5
BcaB01g05977 Brassica carinata HOM05D000493 ORTHO05D001638 7.1e-12 73.9 51 72.5
A03p02580 Brassica napus HOM05D000493 ORTHO05D001638 7.1e-12 73.9 51 72.5
C03p02920 Brassica napus HOM05D000493 ORTHO05D001638 7.1e-12 73.9 51 72.5
BolC3t12847H Brassica oleracea HOM05D000493 ORTHO05D001638 7.1e-12 73.9 51 72.5
BraA03t09619Z Brassica rapa HOM05D000493 ORTHO05D001638 7.1e-12 73.9 51 72.5
AL3G23070 Arabidopsis lyrata HOM05D000493 ORTHO05D001638 1.6e-11 72.8 51 74.5
BraA02t04871Z Brassica rapa HOM05D000493 ORTHO05D001638 2.1e-11 72.4 51 70.6
CARHR206860 Cardamine hirsuta HOM05D000493 ORTHO05D001638 2.1e-11 72.4 51 70.6
Thhalv10013556m.g Eutrema salsugineum HOM05D000493 ORTHO05D001638 2.7e-11 72.0 51 70.6
Carub.0003s1084 Capsella rubella HOM05D000493 ORTHO05D001638 3.5e-11 71.6 51 72.5
AL6G16120 Arabidopsis lyrata HOM05D000493 ORTHO05D001638 6.0e-11 70.9 51 68.6
BcaB05g21681 Brassica carinata HOM05D000493 ORTHO05D005823 7.8e-11 70.5 51 68.6
C02p02600 Brassica napus HOM05D000493 ORTHO05D005823 7.8e-11 70.5 51 68.6
BolC2t06226H Brassica oleracea HOM05D000493 ORTHO05D005823 7.8e-11 70.5 51 68.6
Carub.0006s0503 Capsella rubella HOM05D000493 ORTHO05D001638 1.0e-10 70.1 51 68.6
Thhalv10020791m.g Eutrema salsugineum HOM05D000493 ORTHO05D001638 1.0e-10 70.1 51 68.6
Sp3g09760 Schrenkiella parvula HOM05D000493 ORTHO05D001638 2.3e-10 68.9 51 66.7
Sp6g36740 Schrenkiella parvula HOM05D000493 ORTHO05D001638 2.3e-10 68.9 51 68.6
AT3G11520 Arabidopsis thaliana HOM05D000493 ORTHO05D001638 6.6e-10 67.4 51 68.6
AT5G06150 Arabidopsis thaliana HOM05D000493 ORTHO05D001638 8.7e-10 67.0 51 64.7
CARHR086070 Cardamine hirsuta HOM05D000493 ORTHO05D001638 8.7e-10 67.0 51 68.6
BNapus_Darmor_BZH_scaffold_145p00140 Brassica napus HOM05D000493 ORTHO05D001638 3.3e-09 65.1 52 61.5
BraA01t04179Z Brassica rapa HOM05D000493 ORTHO05D001638 4.3e-09 64.7 52 59.6
BcaB04g21131 Brassica carinata HOM05D000493 ORTHO05D001638 7.3e-09 63.9 52 59.6
BcaC09g48176 Brassica carinata HOM05D000493 ORTHO05D001638 7.3e-09 63.9 49 65.3
BolC1t05311H Brassica oleracea HOM05D000493 ORTHO05D001638 7.3e-09 63.9 49 65.3
Aa31LG3G4920 Aethionema arabicum HOM05D000493 ORTHO05D001638 1.4e-07 59.7 47 66.0
AT1G34460 Arabidopsis thaliana HOM05D000493 ORTHO05D001638 1.4e-07 59.7 50 60.0
THA.LOC104816598 Tarenaya hassleriana HOM05D000493 ORTHO05D001638 1.4e-07 59.7 57 54.4
Aa31LG11G7130 Aethionema arabicum HOM05D000493 ORTHO05D001638 4.0e-07 58.2 43 69.8
SGA_v2.0_scaffold69G23171 Striga asiatica HOM05D000493 ORTHO05D001638 4.0e-07 58.2 61 50.8
THA.LOC104809968 Tarenaya hassleriana HOM05D000493 ORTHO05D001638 4.0e-07 58.2 57 52.6
PGR142G0214 Punica granatum HOM05D000493 ORTHO05D001638 9.0e-07 57.0 70 48.6
A03p55460 Brassica napus HOM05D000493 ORTHO05D018702 1.2e-06 56.6 57 54.4
BraA01t02407Z Brassica rapa HOM05D000001 ORTHO05D000003 1.2e-06 56.6 66 48.5
Gohir.A11G306100 Gossypium hirsutum HOM05D000493 ORTHO05D001638 1.2e-06 56.6 57 52.6
Gohir.D11G321500 Gossypium hirsutum HOM05D000493 ORTHO05D001638 1.2e-06 56.6 57 52.6
Gorai.007G351700 Gossypium raimondii HOM05D000493 ORTHO05D001638 1.2e-06 56.6 57 52.6
Cpa.g.sc92.73 Carica papaya HOM05D000493 ORTHO05D001638 1.5e-06 56.2 51 56.9
FAN20G2864 Fragaria x ananassa HOM05D000493 ORTHO05D001638 1.5e-06 56.2 58 51.7
SGA_v2.0_scaffold66G22282 Striga asiatica HOM05D000493 ORTHO05D001638 2.6e-06 55.5 61 50.8
Duzib106G1101 Durio zibethinus HOM05D000493 ORTHO05D001638 3.4e-06 55.1 57 54.4
Duzib106G0592 Durio zibethinus HOM05D000493 ORTHO05D001638 4.4e-06 54.7 57 52.6
Migut.J01628 Erythranthe guttata HOM05D000493 ORTHO05D001638 4.4e-06 54.7 62 46.8
FvH4_2g04990 Fragaria vesca HOM05D000493 ORTHO05D001638 4.4e-06 54.7 58 51.7
FAN15G2439 Fragaria x ananassa HOM05D000493 ORTHO05D001638 4.4e-06 54.7 58 51.7
FAN24G0999 Fragaria x ananassa HOM05D000493 ORTHO05D001638 4.4e-06 54.7 58 51.7
FAN27G2395 Fragaria x ananassa HOM05D000493 ORTHO05D001638 4.4e-06 54.7 58 51.7
RcHm_v2.0_Chr6g0254751 Rosa chinensis HOM05D000493 ORTHO05D001638 4.4e-06 54.7 57 52.6
unitig_21.g20681 Utricularia gibba HOM05D000070 ORTHO05D007358 4.4e-06 54.7 57 52.6
BcaB04g18645 Brassica carinata HOM05D000493 ORTHO05D001638 5.8e-06 54.3 44 63.6
CiPaw.10G042600 Carya illinoinensis HOM05D000493 ORTHO05D001638 5.8e-06 54.3 55 54.5
Eucgr.K01668 Eucalyptus grandis HOM05D000493 ORTHO05D001638 5.8e-06 54.3 57 50.9
Oeu009522.1 Olea europaea HOM05D000493 ORTHO05D001638 7.6e-06 53.9 57 50.9
AT4G37490 Arabidopsis thaliana HOM05D000493 ORTHO05D001638 9.9e-06 53.5 55 50.9
DCAR_009126 Daucus carota HOM05D000493 ORTHO05D001638 9.9e-06 53.5 56 55.4
SalBow1G7844 Salvia bowleyana HOM05D000493 ORTHO05D001638 9.9e-06 53.5 57 50.9


User provided reference genes

Program Settings