Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p04060 Brassica napus HOM05D000151 ORTHO05D000074 1.5e-68 262.7 130 100.0
BraA07t28198Z Brassica rapa HOM05D000151 ORTHO05D000074 1.5e-68 262.7 130 100.0
BcaC06g36210 Brassica carinata HOM05D000151 ORTHO05D000074 2.3e-53 212.2 130 84.6
Sp3g30320 Schrenkiella parvula HOM05D000151 ORTHO05D000074 1.1e-42 176.8 114 79.8
BcaB08g34687 Brassica carinata HOM05D000151 ORTHO05D000074 6.0e-41 171.0 114 77.2
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 3.0e-40 168.7 114 75.4
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 3.0e-40 168.7 114 75.4
Thhalv10022716m.g Eutrema salsugineum HOM05D000151 ORTHO05D000074 3.9e-40 168.3 114 74.6
BcaC01g02965 Brassica carinata HOM05D000151 ORTHO05D000074 2.5e-39 165.6 114 74.6
C03p57820 Brassica napus HOM05D000151 ORTHO05D000074 2.5e-39 165.6 114 74.6
BolC3t18053H Brassica oleracea HOM05D000151 ORTHO05D000074 2.5e-39 165.6 114 74.6
AT2G17030 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 1.3e-35 153.3 114 68.4
CARHR107350 Cardamine hirsuta HOM05D000151 ORTHO05D000074 1.1e-34 150.2 114 69.3
AL3G49820 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 3.2e-34 148.7 114 66.7
Carub.0003s3095 Capsella rubella HOM05D000151 ORTHO05D000074 7.0e-34 147.5 114 67.5
THA.LOC104819663 Tarenaya hassleriana HOM05D000151 ORTHO05D000074 7.8e-33 144.1 115 67.0
Aa31LG8G14220 Aethionema arabicum HOM05D000151 ORTHO05D000074 1.6e-30 136.3 110 65.5
BolC7t41068H Brassica oleracea HOM05D000151 ORTHO05D000074 9.5e-23 110.5 56 96.4
Gorai.012G157200 Gossypium raimondii HOM05D000151 ORTHO05D000074 5.2e-21 104.8 131 48.1
Manes.04G069000 Manihot esculenta HOM05D000151 ORTHO05D000074 8.9e-21 104.0 120 48.3
Thecc.02G052700 Theobroma cacao HOM05D000151 ORTHO05D000074 3.4e-20 102.1 121 51.2
Gorai.012G157500 Gossypium raimondii HOM05D000151 ORTHO05D000074 5.8e-20 101.3 122 47.5
Duzib052G1153 Durio zibethinus HOM05D000151 ORTHO05D000074 9.9e-20 100.5 121 48.8
Gohir.D04G169200 Gossypium hirsutum HOM05D000151 ORTHO05D000074 9.9e-20 100.5 131 46.6
Gohir.D04G169400 Gossypium hirsutum HOM05D000151 ORTHO05D000074 1.3e-19 100.1 122 47.5
COL.COLO4_18005 Corchorus olitorius HOM05D000151 ORTHO05D000074 3.8e-19 98.6 120 48.3
Gohir.A04G132412 Gossypium hirsutum HOM05D000151 ORTHO05D000074 6.4e-19 97.8 122 46.7
Duzib132G0179 Durio zibethinus HOM05D000151 ORTHO05D000074 8.4e-19 97.4 121 48.8
TWI79G0440 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.9e-18 96.3 121 47.9
Cpa.g.sc20.134 Carica papaya HOM05D000151 ORTHO05D000074 2.4e-18 95.9 116 48.3
Eucgr.I01474 Eucalyptus grandis HOM05D000151 ORTHO05D000074 3.2e-18 95.5 110 49.1
Potri.009G140000 Populus trichocarpa HOM05D000151 ORTHO05D000074 7.1e-18 94.4 116 48.3
Hma1.2p1_0032F.1_g018990 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 4.6e-17 91.7 119 47.9
Potri.004G179685 Populus trichocarpa HOM05D000151 ORTHO05D000074 4.6e-17 91.7 119 47.1
TAR628G0991 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.6e-17 91.7 119 47.1
Sabra04G0121100 Salix brachista HOM05D000151 ORTHO05D000074 6.0e-17 91.3 117 46.2
TWI31G0990 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 6.0e-17 91.3 118 47.5
FAN20G3023 Fragaria x ananassa HOM05D000151 ORTHO05D000074 7.8e-17 90.9 119 48.7
AT2G17036 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 1.0e-16 90.5 114 50.0
Rhsim11G0195100 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.0e-16 90.5 116 47.4
Actinidia18026 Actinidia chinensis HOM05D000151 ORTHO05D000074 1.7e-16 89.7 132 44.7
AL3G49860 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 1.7e-16 89.7 114 49.1
Sabra09G0108800 Salix brachista HOM05D000151 ORTHO05D000074 1.7e-16 89.7 116 44.8
Actinidia20542 Actinidia chinensis HOM05D000151 ORTHO05D000074 2.3e-16 89.4 119 47.9
PGR142G2333 Punica granatum HOM05D000151 ORTHO05D000074 3.0e-16 89.0 116 44.8
RcHm_v2.0_Chr6g0279451 Rosa chinensis HOM05D000151 ORTHO05D000074 3.0e-16 89.0 124 49.2
vmacro02302 Vaccinium macrocarpon HOM05D000151 ORTHO05D000074 3.0e-16 89.0 117 47.0
CiPaw.05G087200 Carya illinoinensis HOM05D000151 ORTHO05D000074 5.1e-16 88.2 141 42.6
FAN24G3248 Fragaria x ananassa HOM05D000151 ORTHO05D000074 6.6e-16 87.8 119 47.9
CSS0014442 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 8.7e-16 87.4 119 45.4
FAN15G2361 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.5e-15 86.7 119 47.1
Prupe.8G172400 Prunus persica HOM05D000151 ORTHO05D000074 1.5e-15 86.7 124 46.0
FvH4_2g15930 Fragaria vesca HOM05D000151 ORTHO05D000074 1.9e-15 86.3 119 47.1
Lj5P174T68 Lonicera japonica HOM05D000151 ORTHO05D000074 3.3e-15 85.5 112 45.5
MSTRG.19960 Avicennia marina HOM05D000151 ORTHO05D000074 4.3e-15 85.1 119 47.1
Cc00_g28600 Coffea canephora HOM05D000151 ORTHO05D000074 7.3e-15 84.3 118 44.9
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 7.3e-15 84.3 114 44.7
Ciclev10028612m.g Citrus clementina HOM05D000151 ORTHO05D000074 9.6e-15 84.0 118 43.2
Migut.B00040 Erythranthe guttata HOM05D000151 ORTHO05D000074 8.1e-14 80.9 118 45.8
Dinv14141 Davidia involucrata HOM05D000151 ORTHO05D000074 1.8e-13 79.7 93 51.6
SGA_v2.0_scaffold32G13324 Striga asiatica HOM05D000151 ORTHO05D000074 3.1e-13 79.0 120 43.3
Aqoxy6G01889 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 5.3e-13 78.2 121 39.7
HanXRQChr15g0477851 Helianthus annuus HOM05D000151 ORTHO05D000074 5.3e-13 78.2 116 43.1
Nn6g31857 Nelumbo nucifera HOM05D000151 ORTHO05D000074 5.3e-13 78.2 120 41.7
QL11p053208 Quercus lobata HOM05D000151 ORTHO05D000074 5.3e-13 78.2 122 45.1
ECA246G4358 Erigeron canadensis HOM05D000151 ORTHO05D000074 6.9e-13 77.8 114 44.7
CANSAT25G1224 Cannabis sativa HOM05D000151 ORTHO05D000074 2.0e-12 76.3 114 41.2
MD05G1128300 Malus domestica HOM05D000151 ORTHO05D000074 3.4e-12 75.5 118 43.2
Cfa005316 Carpinus fangiana HOM05D000151 ORTHO05D000074 7.6e-12 74.3 126 40.5
Glyma.10G088700 Glycine max HOM05D000151 ORTHO05D000074 7.6e-12 74.3 119 46.2
Solyc01g111920.3 Solanum lycopersicum HOM05D000151 ORTHO05D000074 7.6e-12 74.3 119 44.5
CAN.G1235.35 Capsicum annuum HOM05D000151 ORTHO05D000074 9.9e-12 73.9 119 41.2
Sopen01g053970 Solanum pennellii HOM05D000151 ORTHO05D000074 9.9e-12 73.9 119 44.5
Ca_14445_v3 Cicer arietinum L. HOM05D000151 ORTHO05D000074 1.3e-11 73.6 94 46.8
LjContig00081g0016741 Lotus japonicus HOM05D000151 ORTHO05D000074 1.7e-11 73.2 92 46.7
PGSC0003DMG400018632 Solanum tuberosum HOM05D000151 ORTHO05D000074 1.7e-11 73.2 118 43.2
Nn5g30876 Nelumbo nucifera HOM05D000151 ORTHO05D000074 2.9e-11 72.4 102 42.2
SHI05785 Sapria himalayana HOM05D000151 ORTHO05D000074 3.8e-11 72.0 120 36.7
arahy.Tifrunner.gnm1.ann1.2FAG51 Arachis hypogaea HOM05D000151 ORTHO05D000074 4.9e-11 71.6 110 42.7
Aqoxy6G01888 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.9e-10 69.7 126 34.9
Haze_02069 Corylus avellana HOM05D000151 ORTHO05D000074 1.9e-10 69.7 132 38.6
MELO3C013657.2 Cucumis melo HOM05D000151 ORTHO05D000074 1.9e-10 69.7 116 39.7
CsaV3_6G012680 Cucumis sativus L. HOM05D000151 ORTHO05D000074 1.9e-10 69.7 116 39.7
DCAR_022831 Daucus carota HOM05D000151 ORTHO05D000074 1.9e-10 69.7 112 34.8
Medtr3g037710 Medicago truncatula HOM05D000151 ORTHO05D000074 2.4e-10 69.3 125 38.4
Psat5g209280 Pisum sativum HOM05D000151 ORTHO05D000074 3.2e-10 68.9 123 41.5
ClCG00G001890 Citrullus lanatus HOM05D000151 ORTHO05D000074 4.2e-10 68.6 118 40.7
ClCG02G011070 Citrullus lanatus HOM05D000151 ORTHO05D000074 4.2e-10 68.6 118 40.7
C07p06460 Brassica napus HOM05D000151 ORTHO05D000074 9.3e-10 67.4 42 76.2
Eucgr.I01470 Eucalyptus grandis HOM05D000151 ORTHO05D000074 9.3e-10 67.4 90 44.4
Sed0002173 Sechium edule HOM05D000151 ORTHO05D000074 9.3e-10 67.4 117 38.5
PSO675G1630 Papaver somniferum HOM05D000151 ORTHO05D000074 1.6e-09 66.6 117 35.9
Eucgr.I01468 Eucalyptus grandis HOM05D000151 ORTHO05D000074 4.6e-09 65.1 99 44.4
VMungo1080G0462 Vigna mungo HOM05D000151 ORTHO05D000074 4.6e-09 65.1 117 40.2
Ca_14458_v3 Cicer arietinum L. HOM05D000151 ORTHO05D000074 6.0e-09 64.7 98 41.8
Lj3g0018223 Lotus japonicus HOM05D000151 ORTHO05D000074 6.0e-09 64.7 61 60.7
Phvul.005G022400 Phaseolus vulgaris HOM05D000151 ORTHO05D000074 7.8e-09 64.3 112 42.0
Medtr3g030480 Medicago truncatula HOM05D000151 ORTHO05D000074 1.7e-08 63.2 79 44.3
Atru.chr5.3473 Acer truncatum HOM05D000151 ORTHO05D000074 2.3e-08 62.8 90 42.2
PSO541G6252 Papaver somniferum HOM05D000151 ORTHO05D000074 2.3e-08 62.8 117 35.0
Medtr3g030050 Medicago truncatula HOM05D000151 ORTHO05D000074 5.1e-08 61.6 56 53.6
Medtr3g030440 Medicago truncatula HOM05D000151 ORTHO05D000074 5.1e-08 61.6 79 43.0
Eucgr.I01467 Eucalyptus grandis HOM05D000151 ORTHO05D000074 6.6e-08 61.2 99 39.4
Eucgr.I01472 Eucalyptus grandis HOM05D000151 ORTHO05D000074 6.6e-08 61.2 95 43.2
Medtr4g022880 Medicago truncatula HOM05D000151 ORTHO05D000074 1.1e-07 60.5 106 40.6
LjContig00081g0012438 Lotus japonicus HOM05D000151 ORTHO05D000074 1.5e-07 60.1 98 40.8
Medtr3g092000 Medicago truncatula HOM05D000151 ORTHO05D000074 1.5e-07 60.1 81 43.2
Eucgr.I01469 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.9e-07 59.7 84 41.7
Lj3g0027507 Lotus japonicus HOM05D000151 ORTHO05D000074 1.9e-07 59.7 55 54.5
Lj2P487T53 Lonicera japonica HOM05D000151 ORTHO05D000074 3.3e-07 58.9 104 37.5
QL06p052453 Quercus lobata HOM05D000151 ORTHO05D000074 3.3e-07 58.9 117 34.2
Lj3g0003113 Lotus japonicus HOM05D000151 ORTHO05D000074 4.3e-07 58.5 94 40.4
Dinv12042 Davidia involucrata HOM05D000151 ORTHO05D000074 7.3e-07 57.8 121 33.1
Lalb_Chr25g0283041 Lupinus albus HOM05D000151 ORTHO05D000074 7.3e-07 57.8 113 36.3
Medtr1g016570 Medicago truncatula HOM05D000151 ORTHO05D000074 7.3e-07 57.8 92 37.0
Medtr2g047180 Medicago truncatula HOM05D000151 ORTHO05D000074 1.6e-06 56.6 46 54.3
Medtr3g030380 Medicago truncatula HOM05D000151 ORTHO05D000074 1.6e-06 56.6 76 43.4
Medtr6g018390 Medicago truncatula HOM05D000151 ORTHO05D000074 1.6e-06 56.6 46 54.3
TPR.G35299 Trifolium pratense HOM05D000151 ORTHO05D000074 1.6e-06 56.6 46 54.3
Medtr3g029650 Medicago truncatula HOM05D000151 ORTHO05D000074 2.1e-06 56.2 46 58.7
Medtr3g030360 Medicago truncatula HOM05D000151 ORTHO05D000074 2.8e-06 55.8 57 47.4
QL06p052385 Quercus lobata HOM05D000151 ORTHO05D000074 2.8e-06 55.8 108 34.3
Medtr1g007220 Medicago truncatula HOM05D000151 ORTHO05D000074 3.6e-06 55.5 84 44.0
Medtr1g026850 Medicago truncatula HOM05D000151 ORTHO05D000074 3.6e-06 55.5 74 41.9
Dinv08540 Davidia involucrata HOM05D000151 ORTHO05D000074 4.8e-06 55.1 91 34.1
TAR629G2629 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.8e-06 55.1 88 33.0
Lj2A488T12 Lonicera japonica HOM05D000151 ORTHO05D000074 6.2e-06 54.7 104 34.6
Psat5g209400 Pisum sativum HOM05D000151 ORTHO05D000074 6.2e-06 54.7 65 38.5
Hund14178 Selenicereus undatus HOM05D000151 ORTHO05D000074 6.2e-06 54.7 103 34.0
TAR636G3348 Trochodendron aralioides HOM05D000151 ORTHO05D000074 6.2e-06 54.7 119 31.9
Medtr5g078450 Medicago truncatula HOM05D000151 ORTHO05D000074 8.1e-06 54.3 41 61.0
Psat5g209160 Pisum sativum HOM05D000151 ORTHO05D000074 8.1e-06 54.3 61 47.5
Sc18g0006120 Simmondsia chinensis HOM05D000151 ORTHO05D000074 8.1e-06 54.3 119 38.7


User provided reference genes

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