Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 1.3e-203 714.1 877 100.0
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 2.7e-201 706.4 877 99.7
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 1.4e-194 684.1 877 96.9
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 1.2e-193 681.0 877 98.4
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 1.8e-186 657.1 868 98.2
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 2.5e-183 646.7 876 95.3
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 1.5e-172 610.9 878 92.4
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 5.6e-167 592.4 875 91.7
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 1.3e-160 571.2 876 90.2
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 2.3e-160 570.5 875 92.0
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 1.2e-153 548.1 875 88.0
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 5.6e-143 512.7 875 88.5
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 3.0e-128 463.8 875 80.1
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 7.7e-108 396.0 748 94.1
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 8.8e-88 329.3 873 76.5
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 1.3e-86 325.5 866 72.9
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 8.3e-86 322.8 867 70.8
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 1.8e-85 321.6 873 73.9
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 8.5e-83 312.8 876 74.8
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 3.2e-82 310.8 878 65.3
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 5.5e-82 310.1 875 71.7
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 1.0e-80 305.8 871 68.8
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 2.3e-80 304.7 867 75.7
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.0e-79 301.6 869 75.8
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 3.4e-79 300.8 874 69.9
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 7.5e-79 299.7 876 74.8
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.3e-78 298.9 873 72.5
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 4.9e-78 297.0 867 75.3
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 7.7e-76 289.7 873 71.9
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 7.7e-76 289.7 872 74.4
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.0e-75 289.3 875 72.8
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 1.5e-74 285.4 869 74.8
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 4.3e-74 283.9 871 75.0
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 3.6e-73 280.8 866 73.1
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 8.0e-73 279.6 874 74.0
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 5.2e-72 276.9 866 73.0
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 1.2e-71 275.8 869 72.8
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 4.4e-71 273.9 877 67.7
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 5.7e-71 273.5 866 72.7
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 9.8e-71 272.7 869 71.5
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 3.2e-69 267.7 878 70.5
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 1.4e-64 252.3 878 68.3
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.6e-63 248.1 874 70.3
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 4.9e-62 243.8 877 69.7
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 3.2e-61 241.1 867 63.8
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 7.0e-61 240.0 878 65.5
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 7.0e-61 240.0 872 69.3
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 2.0e-60 238.4 870 68.5
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 2.7e-60 238.0 878 65.6
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 1.5e-58 232.3 374 67.4
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.3e-58 231.1 874 63.7
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 5.6e-58 230.3 879 62.5
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 9.5e-58 229.6 873 67.4
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.2e-57 229.2 875 65.8
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 1.2e-55 222.6 875 70.6
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 5.8e-55 220.3 378 66.1
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 9.8e-55 219.5 782 77.7
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.3e-54 219.2 362 67.4
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 2.2e-54 218.4 362 67.7
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 2.2e-54 218.4 874 67.3
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.2e-54 218.4 201 56.2
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 8.3e-54 216.5 873 73.1
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 3.2e-53 214.5 885 58.2
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 4.1e-53 214.2 898 66.1
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 2.7e-52 211.5 869 60.9
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 2.7e-52 211.5 362 66.9
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 1.0e-51 209.5 369 66.1
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 1.0e-51 209.5 875 61.9
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 1.0e-51 209.5 369 65.6
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 5.1e-51 207.2 872 63.1
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 6.6e-51 206.8 884 60.7
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 5.6e-50 203.8 875 63.1
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 5.6e-50 203.8 875 63.1
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 1.2e-49 202.6 872 69.8
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 2.8e-49 201.4 877 68.5
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 1.1e-48 199.5 193 50.3
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.8e-48 198.7 858 64.6
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 1.3e-46 192.6 439 53.8
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 9.2e-45 186.4 339 67.8
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 3.5e-44 184.5 339 67.6
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 4.6e-44 184.1 372 62.1
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.7e-43 182.2 349 65.0
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 3.9e-43 181.0 381 60.4
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.9e-42 178.7 869 70.7
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 5.6e-42 177.2 879 65.4
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.4e-40 171.8 406 48.0
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.2e-39 169.5 366 61.7
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 3.4e-39 167.9 381 63.0
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 3.8e-38 164.5 174 50.0
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 1.3e-35 156.0 367 60.8
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 3.3e-34 151.4 362 60.2
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 1.4e-32 146.0 835 64.9
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 3.1e-32 144.8 177 44.1
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 6.9e-32 143.7 379 58.8
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 4.9e-30 137.5 887 53.1
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 7.1e-29 133.7 373 60.1
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 3.9e-27 127.9 197 35.5
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 5.3e-24 117.5 395 56.5
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 3.8e-22 111.3 144 41.0
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 7.1e-21 107.1 191 37.2
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 2.7e-20 105.1 144 50.7
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 6.7e-19 100.5 152 42.8
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 5.3e-16 90.9 63 65.1
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 2.2e-14 85.5 111 46.8
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 1.9e-13 82.4 103 42.7
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 3.2e-13 81.6 94 43.6


User provided reference genes

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