Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 6.4e-163 577.4 303 100.0
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 1.8e-152 542.7 309 92.9
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 3.3e-151 538.5 303 93.1
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 6.9e-141 504.2 338 80.2
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 4.5e-140 501.5 338 79.9
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 9.5e-66 254.6 341 52.5
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 2.4e-64 250.0 361 50.4
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 3.5e-60 236.1 345 52.2
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 7.8e-60 235.0 342 50.9
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 1.6e-57 227.3 334 50.9
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 2.8e-57 226.5 317 49.2
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 6.9e-56 221.9 349 45.3
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 3.2e-53 213.0 307 47.9
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 9.3e-53 211.5 318 49.1
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 4.0e-48 196.1 318 44.7
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 9.9e-39 164.9 340 38.5
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 4.3e-34 149.4 348 37.4
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 1.4e-32 144.4 340 36.2
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 4.0e-32 142.9 375 32.0
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 4.5e-31 139.4 376 31.9
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 2.7e-28 130.2 336 36.6
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 3.5e-28 129.8 327 37.6
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 6.7e-27 125.6 369 33.9
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 1.9e-26 124.0 369 32.2
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 5.7e-26 122.5 364 36.3
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 3.7e-25 119.8 337 35.0
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 2.4e-24 117.1 327 34.9
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 7.6e-23 112.1 346 32.9
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.6e-23 112.1 343 35.0
C07p61450 Brassica napus HOM05D004095 ORTHO05D003197 2.9e-22 110.2 366 33.1
Thhalv10027062m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 3.8e-22 109.8 294 35.7
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 1.1e-21 108.2 363 32.8
AT4G35940 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 2.5e-21 107.1 383 28.2
BolC7t46570H Brassica oleracea HOM05D004095 ORTHO05D003197 1.2e-20 104.8 378 31.7
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.2e-20 104.8 337 32.9
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 2.1e-20 104.0 332 30.4
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 7.9e-20 102.1 370 31.6
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 5.1e-19 99.4 335 33.4
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-18 98.2 341 34.0
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 2.5e-18 97.1 347 32.0
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 3.7e-17 93.2 343 32.9
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.2e-15 88.2 336 32.1
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.3e-14 84.7 343 30.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 1.9e-13 80.9 318 28.3
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.9e-13 80.9 342 30.4
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 3.2e-13 80.1 324 29.6
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 2.1e-12 77.4 322 28.6
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 2.7e-12 77.0 327 28.1
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 3.6e-12 76.6 341 27.9
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 1.0e-11 75.1 336 28.9
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 1.8e-11 74.3 323 29.7
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 3.0e-11 73.6 340 27.6
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.9e-11 73.2 336 28.0
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 8.8e-11 72.0 95 41.1
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 8.8e-11 72.0 329 28.3
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.1e-10 71.6 131 35.1
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.5e-10 71.2 337 27.0
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 4.4e-10 69.7 375 27.2
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 9.7e-10 68.6 318 25.2
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.7e-09 67.8 204 31.9
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 2.8e-09 67.0 369 27.1
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 4.8e-09 66.2 320 28.8
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 8.2e-09 65.5 337 27.3
BolC9t54253H Brassica oleracea HOM05D004095 ORTHO05D003197 9.1e-08 62.0 39 76.9
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.2e-07 61.6 323 26.6
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 3.4e-07 60.1 352 28.1
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 7.7e-07 58.9 79 41.8
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.0e-06 58.5 329 24.6
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 1.7e-06 57.8 323 25.7
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 1.7e-06 57.8 323 30.0
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.7e-06 57.8 75 38.7
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.2e-06 57.4 78 38.5
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 2.2e-06 57.4 76 38.2
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 2.9e-06 57.0 324 24.1
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 2.9e-06 57.0 313 29.1
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 6.5e-06 55.8 367 24.0
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 8.5e-06 55.5 333 25.2
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 8.5e-06 55.5 80 36.2


User provided reference genes

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