Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 8.7e-149 530.4 291 100.0
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 8.7e-149 530.4 291 100.0
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 2.5e-140 502.3 291 94.5
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 2.5e-140 502.3 291 94.5
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 3.3e-132 475.3 275 93.5
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 6.2e-131 471.1 291 90.7
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 9.3e-127 457.2 291 85.9
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 7.6e-121 437.6 253 94.1
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 1.3e-117 426.8 291 80.1
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 2.3e-117 426.0 291 80.1
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 9.7e-116 420.6 291 78.4
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 9.7e-116 420.6 291 78.4
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 6.3e-115 417.9 291 78.0
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 6.3e-115 417.9 291 78.0
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 5.3e-114 414.8 291 77.7
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 9.0e-114 414.1 291 78.7
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 6.3e-107 391.3 297 74.4
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 1.0e-101 374.0 291 71.8
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 4.4e-100 368.6 292 70.9
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 1.7e-96 356.7 291 68.7
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 3.7e-83 312.4 295 63.4
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 1.1e-82 310.8 292 63.7
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 1.4e-82 310.5 298 59.4
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 5.3e-82 308.5 292 62.7
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 1.2e-81 307.4 295 64.4
BcaC06g36453 Brassica carinata HOM05D004960 ORTHO05D004696 1.0e-80 304.3 277 66.8
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 2.2e-80 303.1 298 63.4
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 2.2e-80 303.1 298 63.4
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 3.8e-80 302.4 295 61.7
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 1.1e-79 300.8 294 60.5
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 1.5e-76 290.4 292 61.0
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 2.0e-76 290.0 292 59.6
BcaB08g34825 Brassica carinata HOM05D004960 ORTHO05D004696 6.3e-75 285.0 298 59.7
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 2.8e-70 269.6 287 55.1
Carub.0003s3295 Capsella rubella HOM05D004960 ORTHO05D004696 2.2e-67 260.0 278 55.8
Carub.0003s2660 Capsella rubella HOM05D004960 ORTHO05D004696 2.9e-64 249.6 289 55.0
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 1.4e-42 177.6 276 41.7
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 7.1e-42 175.3 286 38.5
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 1.7e-40 170.6 279 39.4
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 7.3e-39 165.2 288 37.8
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 9.6e-39 164.9 287 39.7
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 2.0e-36 157.1 287 38.7
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 9.9e-36 154.8 283 35.0
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 3.8e-35 152.9 288 34.7
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 8.4e-35 151.8 273 37.4
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 1.9e-34 150.6 288 33.7
BolC4t25405H Brassica oleracea HOM05D004960 ORTHO05D004696 2.4e-34 150.2 127 68.5
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 4.2e-34 149.4 288 36.1
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 3.9e-32 142.9 289 33.2
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 1.9e-31 140.6 283 34.6
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 5.6e-31 139.0 284 32.4
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 7.3e-31 138.7 231 39.4
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 9.6e-31 138.3 218 40.8
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 2.8e-30 136.7 290 33.8
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 3.6e-30 136.3 264 37.5
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 9.0e-29 131.7 284 33.1
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 1.5e-28 131.0 291 31.6
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 1.5e-28 131.0 274 33.2
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 1.1e-26 124.8 291 33.3
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 1.9e-26 124.0 288 31.6
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 4.2e-26 122.9 291 32.3
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 5.4e-26 122.5 294 32.3
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 5.4e-26 122.5 294 32.3
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.1e-25 120.6 294 32.3
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.1e-25 120.6 281 34.2
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.1e-25 120.6 281 34.2
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 3.0e-24 116.7 269 31.6
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 1.1e-23 114.8 255 32.2
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 2.5e-23 113.6 284 30.3
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 4.3e-23 112.8 297 32.7
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 4.3e-23 112.8 297 32.7
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 1.1e-21 108.2 291 29.6
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.8e-21 107.5 287 28.2
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 3.1e-21 106.7 300 30.0
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 4.0e-21 106.3 282 29.4
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 1.2e-20 104.8 230 35.2
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 2.0e-20 104.0 279 27.6
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 9.9e-20 101.7 301 30.6
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 1.3e-19 101.3 224 37.9
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.7e-19 100.9 292 31.5
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 2.2e-19 100.5 300 30.7
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 8.4e-19 98.6 270 29.3
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 1.9e-18 97.4 296 30.1
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 7.1e-18 95.5 286 28.7
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 9.3e-18 95.1 280 31.4
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.8e-16 90.9 288 27.8
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.0e-16 90.1 292 30.5
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 3.9e-16 89.7 265 27.9
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 5.1e-16 89.4 302 29.8
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 6.7e-16 89.0 266 30.5
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 8.7e-16 88.6 287 29.3
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.5e-15 87.8 269 30.5
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.5e-15 87.8 272 29.8
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 3.3e-15 86.7 246 28.5
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.3e-15 86.7 280 27.9
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 4.3e-15 86.3 126 41.3
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 5.6e-15 85.9 203 34.0
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 2.8e-14 83.6 249 27.7
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 3.7e-14 83.2 278 28.4
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 4.8e-14 82.8 295 27.1
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.1e-13 81.6 292 28.8
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 1.4e-13 81.3 259 30.1
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.8e-13 80.9 286 27.3
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 1.8e-13 80.9 279 25.4
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 1.8e-13 80.9 212 30.7
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 4.0e-13 79.7 288 27.1
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.0e-13 79.7 209 30.6
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 5.3e-13 79.3 262 30.5
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 3.4e-12 76.6 247 28.3
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 4.5e-12 76.3 200 33.0
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.5e-12 76.3 277 30.0
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.0e-11 75.1 301 27.6
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.3e-11 74.7 265 27.5
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 1.7e-11 74.3 222 31.5
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 6.5e-11 72.4 244 29.9
Cc10_g12610 Coffea canephora HOM05D001062 ORTHO05D000884 8.4e-11 72.0 282 24.5
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.9e-10 70.9 244 28.7
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.2e-10 69.7 194 28.9
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 7.1e-10 68.9 218 28.0
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 9.3e-10 68.6 272 25.0
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 1.2e-09 68.2 212 28.3
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.6e-09 67.8 226 27.0
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.6e-09 67.8 259 27.8
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.7e-09 67.0 244 28.3
RcHm_v2.0_Chr4g0404701 Rosa chinensis HOM05D004960 ORTHO05D004696 6.0e-09 65.9 150 28.0
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.0e-08 65.1 244 27.9
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 3.0e-08 63.5 212 25.9
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 3.0e-08 63.5 212 25.9
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 3.9e-08 63.2 238 26.1
CSS0021222 Camellia sinensis var. sinensis HOM05D001062 ORTHO05D000884 1.5e-07 61.2 287 25.4
Migut.L00876 Erythranthe guttata HOM05D001062 ORTHO05D000884 1.9e-07 60.8 204 26.0
Gohir.D05G242200 Gossypium hirsutum HOM05D001062 ORTHO05D000884 3.3e-07 60.1 275 25.5
HanXRQChr05g0160811 Helianthus annuus HOM05D001062 ORTHO05D000884 3.3e-07 60.1 231 24.7
HanXRQChr16g0510881 Helianthus annuus HOM05D001062 ORTHO05D000884 3.3e-07 60.1 232 25.0
PSO541G3165 Papaver somniferum HOM05D001062 ORTHO05D000884 4.3e-07 59.7 285 27.0
RcHm_v2.0_Chr5g0020421 Rosa chinensis HOM05D001062 ORTHO05D000884 4.3e-07 59.7 271 29.5
CSS0049252 Camellia sinensis var. sinensis HOM05D001062 ORTHO05D000884 7.4e-07 58.9 287 25.1
CDE04G1275 Ceratophyllum demersum HOM05D000122 ORTHO05D000139 7.4e-07 58.9 185 26.5
Migut.L00962 Erythranthe guttata HOM05D001062 ORTHO05D000884 7.4e-07 58.9 204 25.0
FAN25G0928 Fragaria x ananassa HOM05D001062 ORTHO05D000884 7.4e-07 58.9 271 28.8
Prupe.4G113700 Prunus persica HOM05D001062 ORTHO05D000884 7.4e-07 58.9 274 30.3
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 7.4e-07 58.9 268 27.2
Duzib116G0744 Durio zibethinus HOM05D001062 ORTHO05D000884 9.6e-07 58.5 284 26.4
FvH4_3g12480 Fragaria vesca HOM05D001062 ORTHO05D000884 9.6e-07 58.5 271 28.8
FAN21G1983 Fragaria x ananassa HOM05D001062 ORTHO05D000884 9.6e-07 58.5 271 28.8
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 9.6e-07 58.5 279 25.1
EL10Ac6g15296 Beta vulgaris HOM05D001062 ORTHO05D000884 1.3e-06 58.2 230 25.7
arahy.Tifrunner.gnm1.ann1.06ADV2 Arachis hypogaea HOM05D001062 ORTHO05D000884 1.6e-06 57.8 286 25.9
Peaxi162Scf00457g00315 Petunia axillaris HOM05D004960 ORTHO05D004696 1.6e-06 57.8 120 32.5
Sed0002264 Sechium edule HOM05D001062 ORTHO05D000884 1.6e-06 57.8 268 28.4
Actinidia35990 Actinidia chinensis HOM05D004960 ORTHO05D004696 2.1e-06 57.4 109 33.0
COL.COLO4_35751 Corchorus olitorius HOM05D001062 ORTHO05D000884 2.8e-06 57.0 218 27.5
Migut.L00968 Erythranthe guttata HOM05D001062 ORTHO05D000884 2.8e-06 57.0 280 24.3
Gohir.D06G197200 Gossypium hirsutum HOM05D001062 ORTHO05D000884 2.8e-06 57.0 261 24.1
Gorai.010G229300 Gossypium raimondii HOM05D001062 ORTHO05D000884 2.8e-06 57.0 220 27.7
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.8e-06 57.0 176 31.2
TWI79G0661 Tripterygium wilfordii HOM05D001062 ORTHO05D000884 3.7e-06 56.6 255 25.1
TAR381G1261 Trochodendron aralioides HOM05D001062 ORTHO05D000884 3.7e-06 56.6 228 26.3
VMungo1309G3024 Vigna mungo HOM05D001062 ORTHO05D000884 3.7e-06 56.6 265 26.4
ClCG08G002800 Citrullus lanatus HOM05D001062 ORTHO05D000884 4.8e-06 56.2 286 27.3
COL.COLO4_35750 Corchorus olitorius HOM05D001062 ORTHO05D000884 4.8e-06 56.2 289 24.6
Hma1.2p1_0642F.1_g194390 Hydrangea macrophylla HOM05D001062 ORTHO05D000884 4.8e-06 56.2 222 25.7
Nn5g28536 Nelumbo nucifera HOM05D001062 ORTHO05D000884 4.8e-06 56.2 276 23.2
Oeu033667.1 Olea europaea HOM05D001062 ORTHO05D000884 4.8e-06 56.2 272 22.4
Thecc.08G139400 Theobroma cacao HOM05D001062 ORTHO05D000884 4.8e-06 56.2 235 26.0
Cfa018388 Carpinus fangiana HOM05D001062 ORTHO05D000884 6.2e-06 55.8 270 23.7
CDE08G0637 Ceratophyllum demersum HOM05D001062 ORTHO05D000884 6.2e-06 55.8 250 22.8
Potri.007G105700 Populus trichocarpa HOM05D001062 ORTHO05D000884 6.2e-06 55.8 275 22.5
DCAR_014404 Daucus carota HOM05D001062 ORTHO05D000884 8.2e-06 55.5 236 26.7
Glyma.14G118500 Glycine max HOM05D001062 ORTHO05D000884 8.2e-06 55.5 283 24.7
Gohir.A02G068205 Gossypium hirsutum HOM05D001062 ORTHO05D000884 8.2e-06 55.5 207 29.5
PGR102G2354 Punica granatum HOM05D001062 ORTHO05D000884 8.2e-06 55.5 196 29.1
SalBow6G1594 Salvia bowleyana HOM05D004960 ORTHO05D004696 8.2e-06 55.5 207 28.5
SEGI_21892 Sequoiadendron giganteum HOM05D001062 ORTHO05D000884 8.2e-06 55.5 235 25.1


User provided reference genes

Program Settings