Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 1.5e-68 262.7 132 100.0
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 3.2e-66 255.0 132 97.0
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 3.2e-66 255.0 132 97.0
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 1.6e-62 242.7 132 91.7
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 2.1e-62 242.3 132 93.2
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 1.8e-61 239.2 132 90.9
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 3.1e-61 238.4 132 90.2
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 5.3e-61 237.7 133 91.0
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 1.5e-60 236.1 142 85.9
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 3.4e-60 235.0 132 87.9
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 4.5e-60 234.6 133 90.2
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 4.5e-60 234.6 133 91.0
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 7.6e-60 233.8 132 90.2
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 1.7e-59 232.6 132 88.6
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 2.2e-59 232.3 133 89.5
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 2.4e-58 228.8 115 98.3
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 2.4e-58 228.8 132 88.6
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 6.0e-57 224.2 133 88.0
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 1.0e-56 223.4 142 82.4
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 1.5e-55 219.5 130 86.2
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.5e-55 219.5 132 83.3
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 4.3e-55 218.0 133 85.7
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 2.1e-54 215.7 112 95.5
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 9.0e-53 210.3 132 83.3
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 6.2e-46 187.6 138 72.5
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 6.9e-45 184.1 134 70.9
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 2.1e-41 172.6 134 67.2
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 4.6e-41 171.4 146 65.1
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 6.0e-41 171.0 140 65.7
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 1.8e-40 169.5 134 67.2
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 1.5e-39 166.4 134 67.9
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 1.5e-39 166.4 135 67.4
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 5.7e-39 164.5 139 63.3
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 7.4e-39 164.1 139 63.3
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 7.4e-39 164.1 140 64.3
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 9.7e-39 163.7 139 64.7
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 1.6e-38 162.9 140 64.3
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 2.8e-38 162.2 139 64.0
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 2.8e-38 162.2 141 63.1
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 8.2e-38 160.6 135 65.2
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 2.4e-37 159.1 115 72.2
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 2.4e-37 159.1 138 63.0
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 3.1e-37 158.7 134 64.9
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 4.1e-37 158.3 136 66.9
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 5.9e-36 154.5 137 64.2
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.0e-35 153.7 145 58.6
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.0e-35 153.7 136 66.2
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 5.0e-35 151.4 139 61.9
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 6.5e-35 151.0 120 65.8
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 8.5e-35 150.6 136 61.8
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.4e-34 149.8 142 59.9
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 1.9e-34 149.4 135 61.5
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 3.2e-34 148.7 137 62.0
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.2e-34 148.7 143 58.0
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 4.2e-34 148.3 145 57.2
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 7.2e-34 147.5 120 66.7
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 3.6e-33 145.2 121 64.5
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 4.6e-33 144.8 146 58.2
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 4.6e-33 144.8 141 58.2
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 7.9e-33 144.1 135 58.5
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 1.8e-32 142.9 134 61.2
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 1.8e-32 142.9 134 62.7
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.3e-32 142.5 137 60.6
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 3.0e-32 142.1 118 66.9
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 3.0e-32 142.1 139 60.4
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 8.7e-32 140.6 142 58.5
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 8.7e-32 140.6 138 57.2
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 1.1e-31 140.2 143 56.6
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 3.3e-31 138.7 117 64.1
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 5.7e-31 137.9 139 57.6
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 9.7e-31 137.1 127 57.5
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.8e-30 135.6 134 57.5
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 3.7e-30 135.2 115 64.3
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 8.2e-30 134.0 132 56.8
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 8.2e-30 134.0 137 54.0
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 8.2e-30 134.0 124 61.3
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 4.1e-29 131.7 128 60.2
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 4.1e-29 131.7 132 52.3
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 4.1e-29 131.7 133 57.1
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 5.3e-29 131.3 119 63.0
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 5.3e-29 131.3 144 52.8
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 6.9e-29 131.0 143 56.6
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 1.5e-28 129.8 134 56.7
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 1.5e-28 129.8 145 53.1
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 3.4e-28 128.6 156 48.7
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 4.5e-28 128.3 182 45.1
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 5.9e-28 127.9 145 50.3
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 7.7e-28 127.5 165 50.3
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 7.7e-28 127.5 153 52.3
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.7e-27 126.3 133 53.4
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 2.2e-27 125.9 113 60.2
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 2.2e-27 125.9 182 44.5
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.9e-27 125.6 165 49.7
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.9e-27 125.6 165 49.7
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 2.9e-27 125.6 159 49.7
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 8.5e-27 124.0 135 51.1
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.4e-26 123.2 128 52.3
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 1.4e-26 123.2 113 57.5
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 1.9e-26 122.9 143 51.7
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.5e-26 122.5 146 50.0
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 3.2e-26 122.1 132 50.8
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 5.5e-26 121.3 139 54.7
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 9.4e-26 120.6 133 50.4
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 2.1e-25 119.4 119 56.3
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 3.6e-25 118.6 156 50.6
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 4.7e-25 118.2 142 50.0
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 1.4e-24 116.7 142 49.3
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.8e-24 116.3 128 51.6
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 2.3e-24 115.9 131 51.9
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 3.0e-24 115.5 112 56.2
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 5.1e-24 114.8 126 54.8
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 8.8e-24 114.0 132 52.3
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.1e-23 113.6 119 55.5
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 1.5e-23 113.2 150 48.7
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 2.6e-23 112.5 136 50.0
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 2.6e-23 112.5 136 49.3
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 3.3e-23 112.1 134 47.8
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 4.4e-23 111.7 122 50.0
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 4.4e-23 111.7 143 49.0
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 5.7e-23 111.3 122 51.6
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 5.7e-23 111.3 127 51.2
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 7.4e-23 110.9 148 45.9
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 7.4e-23 110.9 138 50.0
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 1.3e-22 110.2 160 45.6
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 1.3e-22 110.2 117 53.0
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.3e-22 110.2 156 44.9
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 1.7e-22 109.8 153 45.8
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 2.2e-22 109.4 120 55.0
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 3.7e-22 108.6 131 50.4
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.4e-21 106.7 131 47.3
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 4.1e-21 105.1 126 52.4
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 6.9e-21 104.4 134 47.0
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 2.6e-20 102.4 140 45.7
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 4.5e-20 101.7 111 51.4
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 7.7e-20 100.9 123 47.2
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 2.9e-19 99.0 129 47.3
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 3.8e-19 98.6 149 42.3
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 3.8e-19 98.6 128 46.1
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 2.1e-17 92.8 140 45.7
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 3.0e-16 89.0 95 53.7
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 4.4e-15 85.1 183 35.5
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 7.4e-15 84.3 149 38.9
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 2.8e-14 82.4 111 43.2
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 6.3e-14 81.3 174 35.1
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 1.8e-13 79.7 67 56.7
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 3.1e-13 79.0 101 43.6
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 5.3e-13 78.2 88 48.9
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 2.0e-12 76.3 107 50.5
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 6.1e-09 64.7 100 45.0
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 1.0e-08 63.9 88 48.9
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 4.0e-08 62.0 93 46.2
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 1.3e-06 57.0 95 43.2


User provided reference genes

Program Settings