Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 1.4e-96 356.3 184 100.0
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 3.1e-91 338.6 184 96.7
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 6.8e-83 310.8 175 93.7
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 6.6e-78 294.3 161 96.9
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.8e-51 206.5 123 91.1
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 1.8e-51 206.5 123 91.1
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 3.1e-51 205.7 123 90.2
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 4.0e-51 205.3 123 90.2
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 6.9e-51 204.5 139 79.9
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 1.5e-50 203.4 123 89.4
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 2.0e-50 203.0 123 90.2
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 2.6e-50 202.6 123 89.4
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 2.6e-50 202.6 123 88.6
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 7.6e-50 201.1 123 90.2
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.3e-49 200.3 127 85.0
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 1.7e-49 199.9 123 87.0
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.5e-42 176.8 88 100.0
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 2.6e-42 176.0 211 52.6
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.3e-41 173.7 161 65.2
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 4.2e-40 168.7 107 85.0
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.5e-37 160.2 123 73.2
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.5e-37 159.5 118 73.7
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 7.4e-37 157.9 95 88.4
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.3e-36 157.1 143 64.3
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 1.6e-36 156.8 112 75.0
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.6e-36 156.8 123 72.4
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.6e-36 156.8 189 52.9
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 4.8e-36 155.2 123 71.5
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.8e-35 153.3 123 71.5
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 1.8e-35 153.3 157 58.0
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 2.4e-35 152.9 147 61.9
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.4e-35 152.9 112 74.1
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.4e-35 152.9 144 58.3
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 2.4e-35 152.9 144 60.4
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 4.1e-35 152.1 123 68.3
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 6.9e-35 151.4 122 69.7
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 6.9e-35 151.4 122 69.7
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 9.0e-35 151.0 145 60.7
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 9.0e-35 151.0 122 70.5
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.2e-34 150.6 146 59.6
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 2.0e-34 149.8 150 62.7
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 2.0e-34 149.8 193 51.3
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.6e-34 149.4 123 69.1
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 2.6e-34 149.4 125 68.0
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 2.6e-34 149.4 118 70.3
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.4e-34 149.1 122 69.7
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 1.0e-33 147.5 120 70.0
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.0e-33 147.5 120 69.2
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 1.7e-33 146.7 120 70.0
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.7e-33 146.7 124 67.7
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.7e-33 146.7 148 59.5
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 2.2e-33 146.4 124 67.7
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 3.8e-33 145.6 145 59.3
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 5.0e-33 145.2 122 67.2
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 6.5e-33 144.8 135 63.0
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 8.4e-33 144.4 137 57.7
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.1e-32 144.1 123 68.3
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.9e-32 143.3 174 51.7
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.5e-32 142.9 149 57.0
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 2.5e-32 142.9 128 62.5
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 2.5e-32 142.9 150 57.3
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 3.2e-32 142.5 120 70.8
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 4.2e-32 142.1 142 58.5
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 4.2e-32 142.1 141 58.2
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 5.5e-32 141.7 118 68.6
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.2e-31 140.6 135 60.7
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.2e-31 140.6 148 59.5
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 1.6e-31 140.2 123 63.4
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 2.7e-31 139.4 132 60.6
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 3.5e-31 139.0 127 67.7
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 3.5e-31 139.0 144 58.3
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 6.1e-31 138.3 133 63.9
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 7.9e-31 137.9 171 49.7
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.8e-30 136.7 123 64.2
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.3e-30 136.3 145 57.9
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 3.0e-30 136.0 138 60.9
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 3.0e-30 136.0 141 57.4
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 3.9e-30 135.6 133 60.9
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 6.7e-30 134.8 119 63.9
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 1.1e-29 134.0 73 97.3
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.1e-29 134.0 125 64.8
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 3.3e-29 132.5 100 75.0
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 3.3e-29 132.5 128 62.5
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 1.6e-28 130.2 89 79.8
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.6e-28 130.2 120 61.7
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 2.8e-28 129.4 118 62.7
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 4.8e-28 128.6 129 58.9
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 4.8e-28 128.6 124 63.7
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 6.3e-28 128.3 90 78.9
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 8.2e-28 127.9 177 46.3
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.4e-27 127.1 117 60.7
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 6.9e-27 124.8 97 70.1
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 3.4e-26 122.5 144 53.5
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.7e-25 120.2 131 57.3
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 2.2e-25 119.8 115 59.1
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 2.5e-24 116.3 134 51.5
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 4.2e-24 115.5 133 56.4
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 7.2e-24 114.8 150 48.7
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.2e-23 114.0 75 81.3
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 2.1e-23 113.2 79 77.2
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 7.9e-23 111.3 108 63.0
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.8e-22 110.2 100 62.0
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 2.3e-22 109.8 75 76.0
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 6.7e-22 108.2 117 54.7
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.5e-21 107.1 127 51.2
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 1.5e-21 107.1 118 54.2
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 2.5e-21 106.3 92 64.1
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 2.4e-19 99.8 196 39.3
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.4e-19 99.8 115 55.7
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.0e-17 94.4 101 50.5
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 1.0e-17 94.4 103 54.4
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.3e-17 94.0 47 95.7
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.3e-17 94.0 147 40.1
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-17 92.8 92 53.3
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.9e-16 90.1 97 47.4
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 9.4e-16 87.8 48 93.8
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 9.4e-16 87.8 48 93.8
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.8e-14 83.6 70 62.9
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.6e-13 79.7 47 83.0
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 9.7e-13 77.8 81 55.6
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.3e-12 77.4 47 80.9
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 3.1e-11 72.8 46 78.3
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 1.2e-10 70.9 75 56.0
A02p31010 Brassica napus HOM05D005250 ORTHO05D096592 2.0e-10 70.1 38 92.1
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 9.4e-08 61.2 66 56.1
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.3e-06 56.6 73 43.8


User provided reference genes

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