Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p01390 Brassica napus HOM05D004476 ORTHO05D002200 4.8e-52 207.6 109 100.0
BcaB03g16723 Brassica carinata HOM05D004476 ORTHO05D002200 6.1e-23 110.9 56 100.0
BcaC06g36566 Brassica carinata HOM05D004476 ORTHO05D002200 6.1e-23 110.9 56 100.0
C07p02850 Brassica napus HOM05D004476 ORTHO05D002200 6.1e-23 110.9 56 100.0
BolC7t40682H Brassica oleracea HOM05D004476 ORTHO05D002200 6.1e-23 110.9 56 100.0
BraA07t27934Z Brassica rapa HOM05D004476 ORTHO05D002200 6.1e-23 110.9 56 100.0
BcaC04g22858 Brassica carinata HOM05D004476 ORTHO05D002200 3.0e-22 108.6 56 96.4
A09p12330 Brassica napus HOM05D004476 ORTHO05D002200 3.0e-22 108.6 56 96.4
C09p14540 Brassica napus HOM05D004476 ORTHO05D002200 3.0e-22 108.6 56 96.4
BraA09t36877Z Brassica rapa HOM05D004476 ORTHO05D002200 3.0e-22 108.6 56 96.4
AL3G48970 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 1.2e-21 106.7 56 94.6
BcaB07g31613 Brassica carinata HOM05D004476 ORTHO05D002200 1.2e-21 106.7 56 94.6
CARHR109800 Cardamine hirsuta HOM05D004476 ORTHO05D002200 1.2e-21 106.7 56 94.6
Sp3g32720 Schrenkiella parvula HOM05D004476 ORTHO05D002200 1.2e-21 106.7 56 94.6
Carub.0003s3357 Capsella rubella HOM05D004476 ORTHO05D002200 1.5e-21 106.3 56 92.9
Thhalv10022925m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 2.6e-21 105.5 56 92.9
THA.LOC104803963 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 4.4e-21 104.8 56 91.1
AT2G19350 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 7.5e-21 104.0 56 92.9
BcaNung00496 Brassica carinata HOM05D004476 ORTHO05D002200 8.3e-20 100.5 56 87.5
A03p59280 Brassica napus HOM05D004476 ORTHO05D002200 8.3e-20 100.5 56 87.5
C07p57290 Brassica napus HOM05D004476 ORTHO05D002200 8.3e-20 100.5 56 87.5
BolC7t46198H Brassica oleracea HOM05D004476 ORTHO05D002200 8.3e-20 100.5 56 87.5
BraA03t14985Z Brassica rapa HOM05D004476 ORTHO05D002200 8.3e-20 100.5 56 87.5
CARHR237750 Cardamine hirsuta HOM05D004476 ORTHO05D002200 8.3e-20 100.5 56 87.5
Thhalv10026650m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 8.3e-20 100.5 56 87.5
A01p08310 Brassica napus HOM05D004476 ORTHO05D002200 1.1e-19 100.1 55 87.3
C01p09350 Brassica napus HOM05D004476 ORTHO05D002200 1.1e-19 100.1 55 87.3
BolC1t00923H Brassica oleracea HOM05D004476 ORTHO05D002200 1.1e-19 100.1 55 87.3
BolC9t54358H Brassica oleracea HOM05D004476 ORTHO05D002200 1.1e-19 100.1 81 70.4
THA.LOC104817767 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 1.4e-19 99.8 56 85.7
AL7G22400 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 1.8e-19 99.4 56 85.7
AT4G29850 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 1.8e-19 99.4 56 85.7
Sp7g27660 Schrenkiella parvula HOM05D004476 ORTHO05D002200 2.4e-19 99.0 56 85.7
BraA01t00779Z Brassica rapa HOM05D004476 ORTHO05D002200 4.1e-19 98.2 55 85.5
THA.LOC104813499 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 5.4e-19 97.8 56 82.1
Carub.0004s1478 Capsella rubella HOM05D004476 ORTHO05D002200 7.0e-19 97.4 56 82.1
Aa31LG2G20690 Aethionema arabicum HOM05D004476 ORTHO05D002200 1.6e-18 96.3 55 83.6
TPR.G32576 Trifolium pratense HOM05D004476 ORTHO05D002200 1.6e-18 96.3 55 81.8
CANSAT01G2105 Cannabis sativa HOM05D004476 ORTHO05D002200 2.0e-18 95.9 56 80.4
Gohir.A08G080700 Gossypium hirsutum HOM05D004476 ORTHO05D002200 5.9e-18 94.4 56 78.6
Cpa.g.sc115.54 Carica papaya HOM05D004476 ORTHO05D002200 1.0e-17 93.6 56 80.4
Potri.018G133500 Populus trichocarpa HOM05D004476 ORTHO05D002200 3.8e-17 91.7 56 75.0
Medtr2g038550 Medicago truncatula HOM05D004476 ORTHO05D002200 5.0e-17 91.3 55 80.0
Ca_02141_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 6.6e-17 90.9 55 78.2
TWI34G1740 Tripterygium wilfordii HOM05D004476 ORTHO05D002200 6.6e-17 90.9 56 76.8
Sabra18G0113200 Salix brachista HOM05D004476 ORTHO05D002200 8.6e-17 90.5 56 73.2
Gohir.D08G090800 Gossypium hirsutum HOM05D004476 ORTHO05D002200 1.1e-16 90.1 56 75.0
Gorai.004G096100 Gossypium raimondii HOM05D004476 ORTHO05D002200 1.1e-16 90.1 56 75.0
CiPaw.08G030800 Carya illinoinensis HOM05D004476 ORTHO05D002200 1.5e-16 89.7 55 74.5
Ciclev10009996m.g Citrus clementina HOM05D004476 ORTHO05D002200 1.5e-16 89.7 56 76.8
Psat1g142560 Pisum sativum HOM05D004476 ORTHO05D002200 1.5e-16 89.7 54 77.8
Duzib170G0172 Durio zibethinus HOM05D004476 ORTHO05D002200 1.9e-16 89.4 56 75.0
COL.COLO4_23446 Corchorus olitorius HOM05D004476 ORTHO05D002200 2.5e-16 89.0 56 75.0
Manes.04G036000 Manihot esculenta HOM05D004476 ORTHO05D002200 2.5e-16 89.0 56 75.0
Lalb_Chr11g0074651 Lupinus albus HOM05D004476 ORTHO05D002200 3.3e-16 88.6 55 76.4
arahy.Tifrunner.gnm1.ann1.BX0J8Q Arachis hypogaea HOM05D004476 ORTHO05D002200 4.3e-16 88.2 53 77.4
arahy.Tifrunner.gnm1.ann1.FSCD1Z Arachis hypogaea HOM05D004476 ORTHO05D002200 4.3e-16 88.2 53 77.4
Potri.006G072000 Populus trichocarpa HOM05D004476 ORTHO05D002200 4.3e-16 88.2 55 72.7
Thecc.09G188500 Theobroma cacao HOM05D004476 ORTHO05D002200 4.3e-16 88.2 56 75.0
TAR383G0891 Trochodendron aralioides HOM05D004476 ORTHO05D002200 4.3e-16 88.2 56 71.4
Manes.11G129400 Manihot esculenta HOM05D004476 ORTHO05D002200 5.6e-16 87.8 56 73.2
HPP92_010317 Vanilla planifolia HOM05D004476 ORTHO05D002200 5.6e-16 87.8 56 75.0
CSS0026677 Camellia sinensis var. sinensis HOM05D004476 ORTHO05D002200 9.5e-16 87.0 56 73.2
CsaV3_1G031980 Cucumis sativus L. HOM05D004476 ORTHO05D002200 9.5e-16 87.0 72 61.1
Glyma.15G168600 Glycine max HOM05D004476 ORTHO05D002200 9.5e-16 87.0 53 77.4
PSO063G1528 Papaver somniferum HOM05D004476 ORTHO05D002200 9.5e-16 87.0 56 73.2
PSO170G5845 Papaver somniferum HOM05D004476 ORTHO05D002200 9.5e-16 87.0 56 73.2
GSVIVG01029250001 Vitis vinifera HOM05D004476 ORTHO05D002200 9.5e-16 87.0 56 73.2
Glyma.09G062200 Glycine max HOM05D004476 ORTHO05D002200 1.2e-15 86.7 53 77.4
Atru.chr7.991 Acer truncatum HOM05D004476 ORTHO05D002200 1.6e-15 86.3 56 71.4
AUR62027442 Chenopodium quinoa HOM05D004476 ORTHO05D002200 1.6e-15 86.3 67 62.7
Duzib168G2374 Durio zibethinus HOM05D004476 ORTHO05D002200 1.6e-15 86.3 56 73.2
Migut.J01504 Erythranthe guttata HOM05D004476 ORTHO05D002200 1.6e-15 86.3 56 73.2
HanXRQChr05g0142171 Helianthus annuus HOM05D004476 ORTHO05D002200 1.6e-15 86.3 58 74.1
Phvul.009G233600 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 1.6e-15 86.3 53 75.5
RcHm_v2.0_Chr4g0398651 Rosa chinensis HOM05D004476 ORTHO05D002200 1.6e-15 86.3 56 73.2
vmacro20569 Vaccinium macrocarpon HOM05D004476 ORTHO05D002200 1.6e-15 86.3 56 71.4
Cc06_g12980 Coffea canephora HOM05D004476 ORTHO05D002200 2.1e-15 85.9 56 73.2
Rhsim01G0068600 Rhododendron simsii HOM05D004476 ORTHO05D002200 2.1e-15 85.9 56 71.4
Hund06695 Selenicereus undatus HOM05D004476 ORTHO05D002200 2.1e-15 85.9 55 70.9
Ah.14g086030 Amaranthus hybridus HOM05D004476 ORTHO05D002200 2.8e-15 85.5 55 72.7
CiPaw.07G199800 Carya illinoinensis HOM05D004476 ORTHO05D002200 2.8e-15 85.5 55 70.9
ClCG06G013730 Citrullus lanatus HOM05D004476 ORTHO05D002200 2.8e-15 85.5 56 71.4
MELO3C017417.2 Cucumis melo HOM05D004476 ORTHO05D002200 3.6e-15 85.1 56 69.6
MSTRG.6242 Avicennia marina HOM05D004476 ORTHO05D002200 4.7e-15 84.7 56 71.4
Lsat_1_v5_gn_8_68841 Lactuca sativa HOM05D004476 ORTHO05D002200 4.7e-15 84.7 57 73.7
SGA_v2.0_scaffold17G07943 Striga asiatica HOM05D004476 ORTHO05D002200 4.7e-15 84.7 55 74.5
AUR62031259 Chenopodium quinoa HOM05D004476 ORTHO05D002200 6.1e-15 84.3 55 69.1
Oeu032540.1 Olea europaea HOM05D004476 ORTHO05D002200 6.1e-15 84.3 56 71.4
Oeu025695.1 Olea europaea HOM05D004476 ORTHO05D002200 8.0e-15 84.0 56 69.6
QL11p005289 Quercus lobata HOM05D004476 ORTHO05D002200 8.0e-15 84.0 55 70.9
ATR0580G349 Amborella trichopoda HOM05D004476 ORTHO05D002200 1.0e-14 83.6 56 73.2
Aqoxy7G02925 Aquilegia oxysepala HOM05D004476 ORTHO05D002200 1.0e-14 83.6 56 67.9
Ca_21269_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 1.0e-14 83.6 53 73.6
Eucgr.F03859 Eucalyptus grandis HOM05D004476 ORTHO05D002200 1.0e-14 83.6 53 75.5
VMungo1309G0306 Vigna mungo HOM05D004476 ORTHO05D002200 1.0e-14 83.6 53 75.5
EL10Ac8g19281 Beta vulgaris HOM05D004476 ORTHO05D002200 1.4e-14 83.2 56 66.1
Haze_22059 Corylus avellana HOM05D004476 ORTHO05D002200 1.4e-14 83.2 55 70.9
FvH4_4g06710 Fragaria vesca HOM05D004476 ORTHO05D002200 1.4e-14 83.2 55 70.9
FAN07G1794 Fragaria x ananassa HOM05D004476 ORTHO05D002200 1.4e-14 83.2 55 70.9
FAN12G3358 Fragaria x ananassa HOM05D004476 ORTHO05D002200 1.4e-14 83.2 55 70.9
FAN22G1515 Fragaria x ananassa HOM05D004476 ORTHO05D002200 1.4e-14 83.2 55 70.9
Oeu025208.1 Olea europaea HOM05D004476 ORTHO05D002200 1.4e-14 83.2 55 72.7
unitig_60.g25493 Utricularia gibba HOM05D004476 ORTHO05D002200 1.4e-14 83.2 55 72.7
MSTRG.19721 Avicennia marina HOM05D004476 ORTHO05D002200 1.8e-14 82.8 55 70.9
FAN17G0770 Fragaria x ananassa HOM05D004476 ORTHO05D002200 1.8e-14 82.8 55 69.1
Lj6g0012515 Lotus japonicus HOM05D004476 ORTHO05D002200 1.8e-14 82.8 55 76.4
Medtr4g126790 Medicago truncatula HOM05D004476 ORTHO05D002200 2.3e-14 82.4 53 71.7
TPR.G31650 Trifolium pratense HOM05D004476 ORTHO05D002200 2.3e-14 82.4 53 71.7
Cfa013479 Carpinus fangiana HOM05D004476 ORTHO05D002200 3.0e-14 82.0 55 69.1
SGA_v2.0_scaffold69G23243 Striga asiatica HOM05D004476 ORTHO05D002200 3.0e-14 82.0 56 75.0
MD13G1237400 Malus domestica HOM05D004476 ORTHO05D002200 5.2e-14 81.3 55 69.1
Sed0005515 Sechium edule HOM05D004476 ORTHO05D002200 5.2e-14 81.3 56 69.6
Sc14g0003140 Simmondsia chinensis HOM05D004476 ORTHO05D002200 6.8e-14 80.9 55 69.1
MD16G1242800 Malus domestica HOM05D004476 ORTHO05D002200 1.2e-13 80.1 55 67.3
Nitab4.5_0000957g0040 Nicotiana tabacum HOM05D004476 ORTHO05D002200 1.2e-13 80.1 56 71.4
CDE04G0988 Ceratophyllum demersum HOM05D004476 ORTHO05D002200 1.5e-13 79.7 56 67.9
MSTRG.10746 Avicennia marina HOM05D004476 ORTHO05D002200 2.0e-13 79.3 56 67.9
Nitab4.5_0010128g0020 Nicotiana tabacum HOM05D004476 ORTHO05D002200 2.0e-13 79.3 56 71.4
Prupe.1G069900 Prunus persica HOM05D004476 ORTHO05D002200 2.0e-13 79.3 55 69.1
Sed0012081 Sechium edule HOM05D004476 ORTHO05D002200 2.0e-13 79.3 72 52.8
Psat4g013880 Pisum sativum HOM05D004476 ORTHO05D002200 2.6e-13 79.0 52 69.2
SGA_v2.0_scaffold66G22434 Striga asiatica HOM05D004476 ORTHO05D002200 2.6e-13 79.0 56 71.4
unitig_0.g577 Utricularia gibba HOM05D004476 ORTHO05D002200 3.4e-13 78.6 55 69.1
Glyma.17G056600 Glycine max HOM05D004476 ORTHO05D002200 5.8e-13 77.8 53 71.7
SalBow1G0556 Salvia bowleyana HOM05D004476 ORTHO05D002200 5.8e-13 77.8 55 69.1
Glyma.13G102400 Glycine max HOM05D004476 ORTHO05D002200 7.5e-13 77.4 53 69.8
Gohir.A05G345854 Gossypium hirsutum HOM05D004476 ORTHO05D002200 9.8e-13 77.0 54 64.8
Gohir.D04G085200 Gossypium hirsutum HOM05D004476 ORTHO05D002200 9.8e-13 77.0 54 64.8
Gorai.012G095200 Gossypium raimondii HOM05D004476 ORTHO05D002200 9.8e-13 77.0 54 64.8
PGR142G0686 Punica granatum HOM05D004476 ORTHO05D002200 9.8e-13 77.0 72 56.9
Hma1.2p1_1219F.1_g267870 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 1.3e-12 76.6 56 64.3
HPP92_021983 Vanilla planifolia HOM05D004476 ORTHO05D002200 1.3e-12 76.6 56 67.9
DCAR_017994 Daucus carota HOM05D004476 ORTHO05D002200 3.7e-12 75.1 56 69.6
Lj2g0014857 Lotus japonicus HOM05D004476 ORTHO05D002200 3.7e-12 75.1 53 66.0
PGSC0003DMG400018747 Solanum tuberosum HOM05D004476 ORTHO05D002200 6.4e-12 74.3 56 66.1
CAN.G1495.9 Capsicum annuum HOM05D004476 ORTHO05D002200 8.3e-12 73.9 57 68.4
Sopen07g003040 Solanum pennellii HOM05D004476 ORTHO05D002200 8.3e-12 73.9 56 64.3
Hma1.2p1_0571F.1_g180790 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 1.1e-11 73.6 57 64.9
DCAR_014680 Daucus carota HOM05D004476 ORTHO05D002200 1.9e-11 72.8 54 68.5
Lj2g0010276 Lotus japonicus HOM05D004476 ORTHO05D002200 1.9e-11 72.8 53 62.3
Lj4g0004777 Lotus japonicus HOM05D004476 ORTHO05D002200 3.2e-11 72.0 53 64.2
Nn8g40538 Nelumbo nucifera HOM05D004476 ORTHO05D002200 9.2e-11 70.5 58 63.8
Peaxi162Scf01558g00013 Petunia axillaris HOM05D004476 ORTHO05D002200 9.2e-11 70.5 57 64.9
Haze_24699 Corylus avellana HOM05D004476 ORTHO05D002200 3.5e-10 68.6 42 71.4
Phvul.003G157700 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 7.8e-10 67.4 52 61.5
RcHm_v2.0_Chr2g0106271 Rosa chinensis HOM05D004476 ORTHO05D002200 7.8e-10 67.4 55 60.0
RcHm_v2.0_Chr4g0391941 Rosa chinensis HOM05D004476 ORTHO05D002200 2.3e-09 65.9 51 62.7
Zm00001eb206870 Zea mays HOM05D004476 ORTHO05D002200 1.5e-08 63.2 56 57.1
SMO348G0029 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 3.3e-08 62.0 56 55.4
Mapoly0038s0099 Marchantia polymorpha HOM05D004476 ORTHO05D002200 5.6e-08 61.2 56 57.1
RcHm_v2.0_Chr3g0494811 Rosa chinensis HOM05D004476 ORTHO05D002200 7.3e-08 60.8 55 56.4
Zm00001eb389280 Zea mays HOM05D004476 ORTHO05D002200 9.5e-08 60.5 53 54.7
Os02g0176400 Oryza sativa ssp. japonica HOM05D004476 ORTHO05D002200 1.2e-07 60.1 55 56.4
Pp3c12_21250 Physcomitrium patens HOM05D004476 ORTHO05D002200 1.2e-07 60.1 53 60.4
Nitab4.5_0005445g0030 Nicotiana tabacum HOM05D004476 ORTHO05D002200 3.1e-06 55.5 44 63.6


User provided reference genes

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