Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 2.0e-118 429.1 216 100.0
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 8.5e-101 370.5 333 63.4
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 1.5e-100 369.8 333 63.1
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 1.5e-100 369.8 333 63.1
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 2.5e-100 369.0 333 63.1
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.0e-93 347.1 341 59.2
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.5e-89 333.2 336 57.4
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 3.4e-81 305.4 330 53.9
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 2.8e-75 285.8 334 51.5
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 4.9e-72 275.0 333 50.2
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 1.0e-66 257.3 171 79.5
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 1.0e-66 257.3 171 79.5
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.2e-56 223.0 136 81.6
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 4.1e-55 218.8 171 70.2
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.9e-47 193.4 319 38.2
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.6e-44 181.0 325 36.0
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 3.6e-43 179.1 145 62.1
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 9.9e-41 171.0 153 56.2
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 1.7e-40 170.2 146 63.7
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.4e-39 167.2 312 34.3
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.4e-39 167.2 301 34.9
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.4e-39 166.4 153 54.9
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 9.3e-39 164.5 157 54.8
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.2e-38 164.1 145 57.9
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.6e-38 163.7 302 34.8
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.1e-38 163.3 335 32.8
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 1.7e-37 160.2 122 65.6
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 3.0e-37 159.5 327 33.3
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 5.1e-37 158.7 122 64.8
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 6.6e-37 158.3 146 54.1
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 6.6e-37 158.3 145 55.2
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.3e-35 154.1 209 43.1
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 4.8e-35 152.1 146 56.8
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 1.8e-34 150.2 147 53.1
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.8e-34 150.2 145 51.0
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.0e-34 149.1 172 45.9
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.5e-33 147.1 144 55.6
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 2.0e-33 146.7 162 47.5
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 2.6e-33 146.4 162 47.5
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.6e-33 146.4 141 51.8
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 7.6e-33 144.8 157 54.1
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 7.6e-33 144.8 333 30.0
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 7.6e-33 144.8 149 52.3
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 9.9e-33 144.4 323 31.0
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 9.9e-33 144.4 147 51.0
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.7e-32 143.7 173 43.9
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.7e-32 143.7 145 53.1
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 2.2e-32 143.3 145 53.1
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 2.2e-32 143.3 159 48.4
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 2.9e-32 142.9 149 49.7
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.8e-32 142.5 146 49.3
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 3.8e-32 142.5 150 50.7
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 3.8e-32 142.5 144 50.7
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 4.9e-32 142.1 152 52.6
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 6.4e-32 141.7 178 51.1
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 6.4e-32 141.7 142 52.1
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 1.1e-31 141.0 147 51.0
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.9e-31 140.2 142 51.4
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.9e-31 140.2 298 32.2
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 2.4e-31 139.8 147 53.7
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.4e-31 139.8 162 46.3
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 3.2e-31 139.4 134 51.5
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 7.1e-31 138.3 152 50.0
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 7.1e-31 138.3 160 45.6
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.6e-30 137.1 144 50.0
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.3e-29 134.0 344 30.2
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 1.8e-29 133.7 150 48.0
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.8e-29 133.7 151 48.3
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.8e-29 133.7 171 41.5
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.8e-29 133.7 171 41.5
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.8e-29 133.7 150 48.0
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.8e-29 133.7 152 47.4
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.0e-29 132.9 347 30.0
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 3.9e-29 132.5 168 43.5
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 3.9e-29 132.5 132 52.3
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 1.1e-28 131.0 170 44.7
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 2.5e-28 129.8 152 49.3
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.3e-28 129.4 166 47.6
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 5.6e-28 128.6 150 48.7
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 5.6e-28 128.6 150 47.3
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 7.4e-28 128.3 162 47.5
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 7.4e-28 128.3 150 47.3
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 2.1e-27 126.7 162 46.3
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 8.1e-27 124.8 160 46.9
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.8e-26 123.6 130 48.5
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 3.1e-26 122.9 168 44.0
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.0e-26 122.5 130 47.7
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 6.9e-26 121.7 159 44.7
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 6.9e-26 121.7 314 28.3
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 6.9e-26 121.7 163 45.4
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 9.0e-26 121.3 299 32.1
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.5e-25 120.6 158 46.8
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 2.0e-25 120.2 123 53.7
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 3.4e-25 119.4 164 44.5
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 4.5e-25 119.0 153 47.1
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 4.5e-25 119.0 187 41.2
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 7.6e-25 118.2 148 45.9
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.6e-25 118.2 154 44.2
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 7.6e-25 118.2 161 43.5
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 9.9e-25 117.9 155 44.5
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.3e-24 117.5 156 48.1
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.3e-24 117.5 202 41.6
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.7e-24 117.1 154 43.5
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 1.7e-24 117.1 174 42.0
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 2.2e-24 116.7 217 37.3
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.4e-23 114.0 166 43.4
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.4e-23 114.0 143 46.9
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.9e-23 113.6 139 46.0
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.5e-23 112.1 161 42.9
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 9.3e-23 111.3 167 42.5
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 1.9e-20 103.6 129 48.1
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 2.5e-20 103.2 122 44.3
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 2.5e-20 103.2 380 26.6
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 7.4e-20 101.7 257 29.6
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.6e-19 100.5 159 42.8
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.4e-18 97.4 161 39.1
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.4e-18 96.7 250 28.4
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.2e-17 94.4 109 46.8
BcaB04g17137 Brassica carinata HOM05D005167 ORTHO05D006312 2.0e-17 93.6 58 86.2
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.6e-17 93.2 140 41.4
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 3.4e-17 92.8 120 48.3
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.6e-17 91.7 82 57.3
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 4.2e-15 85.9 134 41.8
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 4.6e-14 82.4 201 32.8
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 5.1e-13 79.0 313 25.6
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 9.6e-12 74.7 100 46.0
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.1e-10 69.7 76 52.6
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.5e-09 65.9 101 36.6
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 7.6e-09 65.1 59 45.8
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 3.2e-07 59.7 68 39.7
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 7.9e-06 55.1 41 58.5


User provided reference genes

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