Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p00900 Brassica napus HOM05D005872 ORTHO05D017612 8.6e-70 266.9 140 100.0
C01p40880 Brassica napus HOM05D005872 ORTHO05D017612 1.1e-56 223.4 137 87.6
BolC1t04043H Brassica oleracea HOM05D005872 ORTHO05D017612 1.1e-56 223.4 137 87.6
C03p78990 Brassica napus HOM05D005872 ORTHO05D017612 3.4e-42 175.3 106 88.7
BcaC04g22283 Brassica carinata HOM05D005872 ORTHO05D017612 5.8e-34 147.9 112 75.0
BcaC01g03729 Brassica carinata HOM05D005872 ORTHO05D017612 3.5e-31 138.7 106 72.6
BcaC01g03102 Brassica carinata HOM05D052258 ORTHO05D039292 9.3e-24 114.0 110 62.7
BolC3t17889H Brassica oleracea HOM05D052258 ORTHO05D039292 9.3e-24 114.0 110 62.7
A10p05890 Brassica napus HOM05D005872 ORTHO05D008133 1.3e-22 110.2 82 72.0
BraA10t42851Z Brassica rapa HOM05D005872 ORTHO05D008133 1.3e-22 110.2 82 72.0
Thhalv10008395m.g Eutrema salsugineum HOM05D005872 ORTHO05D008133 1.8e-22 109.8 81 70.4
Sp1g06070 Schrenkiella parvula HOM05D005872 ORTHO05D008133 2.3e-22 109.4 81 69.1
C05p05390 Brassica napus HOM05D005872 ORTHO05D008133 8.7e-22 107.5 82 70.7
BolC5t29311H Brassica oleracea HOM05D005872 ORTHO05D008133 8.7e-22 107.5 82 70.7
Carub.0001s0662 Capsella rubella HOM05D005872 ORTHO05D008133 8.7e-22 107.5 82 69.5
AT1G07320 Arabidopsis thaliana HOM05D005872 ORTHO05D008133 1.9e-21 106.3 82 68.3
Aa31LG1G6580 Aethionema arabicum HOM05D005872 ORTHO05D008133 2.5e-21 105.9 81 65.4
THA.LOC104808420 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 2.5e-21 105.9 81 67.9
CARHR007030 Cardamine hirsuta HOM05D005872 ORTHO05D008133 3.3e-21 105.5 82 68.3
AL1G17470 Arabidopsis lyrata HOM05D005872 ORTHO05D008133 4.3e-21 105.1 82 67.1
Ciclev10028981m.g Citrus clementina HOM05D005872 ORTHO05D008133 1.6e-20 103.2 81 63.0
THA.LOC104826298 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 1.6e-20 103.2 81 66.7
Atru.chr3.4076 Acer truncatum HOM05D005872 ORTHO05D008133 2.8e-20 102.4 81 63.0
Sc06g0008430 Simmondsia chinensis HOM05D005872 ORTHO05D008133 1.2e-18 97.1 81 60.5
Duzib168G1043 Durio zibethinus HOM05D005872 ORTHO05D008133 1.5e-18 96.7 81 61.7
Lsat_1_v5_gn_5_172301 Lactuca sativa HOM05D005872 ORTHO05D008133 5.8e-18 94.7 81 59.3
Sabra06G0170900 Salix brachista HOM05D005872 ORTHO05D008133 1.3e-17 93.6 82 59.8
HanXRQChr01g0011361 Helianthus annuus HOM05D005872 ORTHO05D008133 1.7e-17 93.2 83 59.0
Nitab4.5_0000918g0030 Nicotiana tabacum HOM05D005872 ORTHO05D008133 1.7e-17 93.2 81 59.3
Rhsim01G0235400 Rhododendron simsii HOM05D005872 ORTHO05D008133 1.7e-17 93.2 81 58.0
Gohir.A08G002100 Gossypium hirsutum HOM05D005872 ORTHO05D008133 2.2e-17 92.8 81 59.3
Gohir.D08G012800 Gossypium hirsutum HOM05D005872 ORTHO05D008133 2.2e-17 92.8 81 59.3
Gorai.004G006900 Gossypium raimondii HOM05D005872 ORTHO05D008133 2.2e-17 92.8 81 59.3
Thecc.09G305200 Theobroma cacao HOM05D005872 ORTHO05D008133 2.2e-17 92.8 81 60.5
Potri.006G221100 Populus trichocarpa HOM05D005872 ORTHO05D008133 2.9e-17 92.4 82 58.5
COL.COLO4_19111 Corchorus olitorius HOM05D005872 ORTHO05D008133 3.8e-17 92.0 81 58.0
Lj1A141T52 Lonicera japonica HOM05D005872 ORTHO05D008133 3.8e-17 92.0 81 56.8
Cfa011659 Carpinus fangiana HOM05D005872 ORTHO05D008133 4.9e-17 91.7 81 58.0
Haze_24262 Corylus avellana HOM05D005872 ORTHO05D008133 4.9e-17 91.7 81 58.0
Dinv14463 Davidia involucrata HOM05D005872 ORTHO05D008133 4.9e-17 91.7 81 55.6
MELO3C025869.2 Cucumis melo HOM05D005872 ORTHO05D008133 6.5e-17 91.3 81 58.0
ECA248G3182 Erigeron canadensis HOM05D005872 ORTHO05D008133 6.5e-17 91.3 81 54.3
CAN.G375.78 Capsicum annuum HOM05D005872 ORTHO05D008133 1.1e-16 90.5 81 56.8
CAN.G375.79 Capsicum annuum HOM05D005872 ORTHO05D008133 1.1e-16 90.5 81 56.8
CANSAT54G1024 Cannabis sativa HOM05D005872 ORTHO05D008133 1.4e-16 90.1 81 55.6
ClCG02G019690 Citrullus lanatus HOM05D005872 ORTHO05D008133 1.4e-16 90.1 81 56.8
CsaV3_6G016380 Cucumis sativus L. HOM05D005872 ORTHO05D008133 1.4e-16 90.1 81 56.8
Glyma.03G110100 Glycine max HOM05D005872 ORTHO05D008133 1.4e-16 90.1 82 61.0
Nitab4.5_0000325g0040 Nicotiana tabacum HOM05D005872 ORTHO05D008133 1.9e-16 89.7 81 56.8
Solyc07g061900.3 Solanum lycopersicum HOM05D005872 ORTHO05D008133 1.9e-16 89.7 81 56.8
Sopen07g030180 Solanum pennellii HOM05D005872 ORTHO05D008133 1.9e-16 89.7 81 56.8
PGSC0003DMG400007051 Solanum tuberosum HOM05D005872 ORTHO05D008133 1.9e-16 89.7 81 56.8
Glyma.07G114900 Glycine max HOM05D005872 ORTHO05D008133 2.5e-16 89.4 82 61.0
Manes.01G164100 Manihot esculenta HOM05D005872 ORTHO05D008133 2.5e-16 89.4 81 58.0
Prupe.6G060600 Prunus persica HOM05D005872 ORTHO05D008133 2.5e-16 89.4 81 59.3
Hund18857 Selenicereus undatus HOM05D005872 ORTHO05D008133 2.5e-16 89.4 81 54.3
HPP92_014295 Vanilla planifolia HOM05D005872 ORTHO05D008133 3.2e-16 89.0 82 56.1
VMungo0331G0535 Vigna mungo HOM05D005872 ORTHO05D008133 3.2e-16 89.0 82 59.8
Sed0022906 Sechium edule HOM05D005872 ORTHO05D008133 4.2e-16 88.6 81 55.6
TAR369G0221 Trochodendron aralioides HOM05D005872 ORTHO05D008133 4.2e-16 88.6 81 54.3
TAR369G0416 Trochodendron aralioides HOM05D005872 ORTHO05D008133 4.2e-16 88.6 81 54.3
Hma1.2p1_1010F.1_g247380 Hydrangea macrophylla HOM05D005872 ORTHO05D008133 5.5e-16 88.2 81 55.6
TWI75G1308 Tripterygium wilfordii HOM05D005872 ORTHO05D008133 5.5e-16 88.2 81 58.0
Phvul.010G048100 Phaseolus vulgaris HOM05D005872 ORTHO05D008133 1.2e-15 87.0 82 59.8
Ah.08g220770 Amaranthus hybridus HOM05D005872 ORTHO05D008133 1.6e-15 86.7 81 55.6
Cc01_g13960 Coffea canephora HOM05D005872 ORTHO05D008133 1.6e-15 86.7 81 55.6
MD03G1073800 Malus domestica HOM05D005872 ORTHO05D008133 1.6e-15 86.7 81 56.8
Actinidia34449 Actinidia chinensis HOM05D005872 ORTHO05D008133 2.1e-15 86.3 81 53.1
ClCG06G015810 Citrullus lanatus HOM05D005872 ORTHO05D008133 2.1e-15 86.3 81 55.6
Nn2g13627 Nelumbo nucifera HOM05D005872 ORTHO05D008133 2.1e-15 86.3 81 54.3
Aqoxy4G02659 Aquilegia oxysepala HOM05D005872 ORTHO05D008133 2.7e-15 85.9 81 53.1
PSO339G6296 Papaver somniferum HOM05D005872 ORTHO05D008133 4.6e-15 85.1 81 55.6
PSO384G4655 Papaver somniferum HOM05D005872 ORTHO05D008133 4.6e-15 85.1 81 55.6
CDE06G2541 Ceratophyllum demersum HOM05D005872 ORTHO05D008133 7.9e-15 84.3 81 51.9
CDE07G0691 Ceratophyllum demersum HOM05D005872 ORTHO05D008133 7.9e-15 84.3 81 51.9
arahy.Tifrunner.gnm1.ann1.MB6FU1 Arachis hypogaea HOM05D005872 ORTHO05D008133 1.0e-14 84.0 82 56.1
arahy.Tifrunner.gnm1.ann1.PIAF8F Arachis hypogaea HOM05D005872 ORTHO05D008133 1.0e-14 84.0 82 56.1
CiPaw.14G061000 Carya illinoinensis HOM05D005872 ORTHO05D008133 1.8e-14 83.2 81 51.9
AUR62001682 Chenopodium quinoa HOM05D005872 ORTHO05D008133 2.3e-14 82.8 81 54.3
FAN21G3245 Fragaria x ananassa HOM05D005872 ORTHO05D008133 2.3e-14 82.8 84 56.0
MD11G1080100 Malus domestica HOM05D005872 ORTHO05D008133 3.0e-14 82.4 84 56.0
Psat4g224360 Pisum sativum HOM05D005872 ORTHO05D008133 3.0e-14 82.4 82 57.3
QL01p026804 Quercus lobata HOM05D005872 ORTHO05D008133 3.0e-14 82.4 84 57.1
AUR62020100 Chenopodium quinoa HOM05D005872 ORTHO05D008133 3.9e-14 82.0 81 54.3
vmacro14583 Vaccinium macrocarpon HOM05D005872 ORTHO05D008133 5.1e-14 81.6 83 51.8
EL10Ac7g16129 Beta vulgaris HOM05D005872 ORTHO05D008133 6.7e-14 81.3 82 54.9
FvH4_3g38221 Fragaria vesca HOM05D005872 ORTHO05D008133 6.7e-14 81.3 84 54.8
FAN11G1028 Fragaria x ananassa HOM05D005872 ORTHO05D008133 6.7e-14 81.3 84 54.8
FAN16G1585 Fragaria x ananassa HOM05D005872 ORTHO05D008133 6.7e-14 81.3 84 54.8
Lj3g0000632 Lotus japonicus HOM05D005872 ORTHO05D008133 6.7e-14 81.3 82 54.9
RcHm_v2.0_Chr5g0068721 Rosa chinensis HOM05D005872 ORTHO05D008133 6.7e-14 81.3 84 54.8
Eucgr.J01939 Eucalyptus grandis HOM05D005872 ORTHO05D008133 8.7e-14 80.9 81 51.9
MSTRG.17870 Avicennia marina HOM05D005872 ORTHO05D008133 1.1e-13 80.5 81 53.1
Nn2g11395 Nelumbo nucifera HOM05D005872 ORTHO05D008133 1.1e-13 80.5 81 50.6
Oeu045518.2 Olea europaea HOM05D005872 ORTHO05D008133 1.1e-13 80.5 81 54.3
SGA_v2.0_scaffold161G37856 Striga asiatica HOM05D005872 ORTHO05D008133 1.5e-13 80.1 81 51.9
DCAR_018967 Daucus carota HOM05D000012 ORTHO05D174931 1.9e-13 79.7 81 51.9
Ca_25798_v3 Cicer arietinum L. HOM05D005872 ORTHO05D008133 2.5e-13 79.3 82 53.7
MBI05_g03471_MAGBIO Magnolia biondii HOM05D005872 ORTHO05D008133 2.5e-13 79.3 82 51.2
BolC3t17204H Brassica oleracea HOM05D005872 ORTHO05D105611 7.4e-13 77.8 41 92.7
PGR119G2098 Punica granatum HOM05D005872 ORTHO05D008133 7.4e-13 77.8 81 51.9
TPR.G33123 Trifolium pratense HOM05D005872 ORTHO05D008133 7.4e-13 77.8 82 53.7
unitig_0.g444 Utricularia gibba HOM05D005872 ORTHO05D008133 7.4e-13 77.8 81 54.3
SalBow2G3036 Salvia bowleyana HOM05D005872 ORTHO05D008133 1.3e-12 77.0 81 51.9
Os03g0265400 Oryza sativa ssp. japonica HOM05D005872 ORTHO05D008133 2.8e-12 75.9 82 50.0
Medtr8g006995 Medicago truncatula HOM05D005872 ORTHO05D008133 3.7e-12 75.5 82 52.4
Migut.N00890 Erythranthe guttata HOM05D005872 ORTHO05D008133 4.8e-12 75.1 81 49.4
Peaxi162Scf00003g04831 Petunia axillaris HOM05D005872 ORTHO05D008133 8.2e-12 74.3 82 48.8
ATR0618G074 Amborella trichopoda HOM05D005872 ORTHO05D008133 1.1e-11 73.9 81 48.1
BcaC07g40681 Brassica carinata HOM05D005872 ORTHO05D017612 1.4e-11 73.6 37 94.6
Zm00001eb011760 Zea mays HOM05D005872 ORTHO05D008133 4.1e-11 72.0 82 50.0
C08p36790 Brassica napus HOM05D005872 ORTHO05D017612 1.5e-10 70.1 35 94.3
BolC8t51258H Brassica oleracea HOM05D005872 ORTHO05D017612 1.5e-10 70.1 35 94.3
CSS0008565 Camellia sinensis var. sinensis HOM05D005872 ORTHO05D008133 3.4e-10 68.9 63 55.6
Lalb_Chr12g0210551 Lupinus albus HOM05D005872 ORTHO05D008133 7.6e-10 67.8 63 52.4
SEGI_15715 Sequoiadendron giganteum HOM05D005872 ORTHO05D008133 5.0e-09 65.1 82 43.9
AagrBONN_evm.TU.Sc2ySwM_344.3555 Anthoceros agrestis HOM05D005872 ORTHO05D008133 9.3e-08 60.8 82 40.2
SMO347G0310 Selaginella moellendorffii HOM05D005872 ORTHO05D008133 9.3e-08 60.8 81 42.0
Pp3c8_21780 Physcomitrium patens HOM05D005872 ORTHO05D008133 4.6e-07 58.5 81 35.8
Cpa.g.sc112.52 Carica papaya HOM05D005872 ORTHO05D008133 7.9e-07 57.8 37 73.0
RcHm_v2.0_Chr5g0068671 Rosa chinensis HOM05D005872 ORTHO05D008133 2.3e-06 56.2 46 56.5
Pp3c23_4120 Physcomitrium patens HOM05D005872 ORTHO05D008133 5.1e-06 55.1 81 33.3
GSVIVG01024788001 Vitis vinifera HOM05D005872 ORTHO05D008133 5.1e-06 55.1 37 64.9
Mapoly0001s0232 Marchantia polymorpha HOM05D005872 ORTHO05D008133 6.7e-06 54.7 81 38.3
Medtr8g007000 Medicago truncatula HOM05D002442 ORTHO05D002670 8.7e-06 54.3 43 58.1


User provided reference genes

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