Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 4.9e-39 164.1 87 100.0
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 4.9e-39 164.1 87 100.0
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 3.1e-09 65.1 37 86.5
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.2e-08 63.2 37 83.8
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 1.2e-08 63.2 37 83.8
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.2e-08 63.2 37 83.8
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.2e-08 63.2 37 83.8
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.5e-08 62.8 37 83.8
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.5e-08 62.8 37 83.8
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-08 62.8 37 83.8
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-08 62.8 37 83.8
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.5e-08 62.8 37 83.8
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.5e-08 62.8 37 83.8
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.5e-08 62.8 37 83.8
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 4.4e-08 61.2 37 81.1
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 4.4e-08 61.2 37 81.1
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 9.9e-08 60.1 63 57.1
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.3e-07 59.7 46 67.4
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.3e-07 59.7 42 66.7
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.7e-07 59.3 37 75.7
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.7e-07 59.3 48 58.3
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.7e-07 59.3 39 71.8
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.7e-07 59.3 37 75.7
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.2e-07 58.9 37 75.7
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 2.9e-07 58.5 37 73.0
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 2.9e-07 58.5 37 75.7
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.9e-07 58.5 43 65.1
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 2.9e-07 58.5 37 75.7
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 3.8e-07 58.2 37 73.0
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 3.8e-07 58.2 42 64.3
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 3.8e-07 58.2 37 73.0
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 3.8e-07 58.2 37 75.7
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.8e-07 58.2 37 75.7
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.8e-07 58.2 37 75.7
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 4.9e-07 57.8 37 73.0
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.9e-07 57.8 37 73.0
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.9e-07 57.8 37 73.0
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 4.9e-07 57.8 42 64.3
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 78.4
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 70.3
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 6.4e-07 57.4 37 73.0
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 8.4e-07 57.0 37 70.3
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 8.4e-07 57.0 37 70.3
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 8.4e-07 57.0 37 75.7
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.1e-06 56.6 37 73.0
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.1e-06 56.6 37 73.0
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.9e-06 55.8 37 73.0
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.9e-06 55.8 37 70.3
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.9e-06 55.8 37 70.3
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.9e-06 55.8 37 70.3
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.9e-06 55.8 37 70.3
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.9e-06 55.8 37 70.3
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.9e-06 55.8 37 70.3
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.9e-06 55.8 37 70.3
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.9e-06 55.8 37 70.3
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.4e-06 55.5 37 70.3
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.4e-06 55.5 37 75.7
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.4e-06 55.5 37 75.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 2.4e-06 55.5 37 75.7
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 2.4e-06 55.5 37 67.6
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 3.2e-06 55.1 37 70.3
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 3.2e-06 55.1 37 67.6
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.2e-06 55.1 37 70.3
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 4.2e-06 54.7 37 67.6
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 4.2e-06 54.7 37 67.6
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 4.2e-06 54.7 37 67.6
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 5.4e-06 54.3 37 70.3
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 5.4e-06 54.3 37 67.6
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 5.4e-06 54.3 37 67.6
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 7.1e-06 53.9 37 67.6
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 7.1e-06 53.9 37 67.6
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 7.1e-06 53.9 37 70.3
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 7.1e-06 53.9 37 70.3
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 7.1e-06 53.9 37 70.3
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 9.3e-06 53.5 37 64.9
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 9.3e-06 53.5 37 64.9
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 9.3e-06 53.5 37 67.6
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 9.3e-06 53.5 37 67.6


User provided reference genes

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