Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 1.0e-196 689.9 349 100.0
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 2.7e-181 638.6 376 85.9
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 6.0e-181 637.5 376 85.9
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 5.3e-177 624.4 384 85.2
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 3.8e-151 538.5 357 79.3
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.0e-148 530.4 415 70.4
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.8e-129 466.5 373 71.6
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.6e-128 463.4 415 64.1
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 9.2e-121 437.6 441 59.9
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.7e-119 433.3 400 63.0
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 1.7e-114 416.8 405 61.7
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 4.4e-91 339.0 248 72.6
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 1.1e-89 334.3 298 65.8
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 1.1e-89 334.3 298 65.8
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 2.4e-73 280.0 360 47.8
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.4e-68 264.2 249 54.6
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 9.9e-67 258.1 277 50.2
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 1.9e-65 253.8 192 64.6
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 5.5e-65 252.3 196 61.2
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 7.1e-65 251.9 201 61.2
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 7.1e-65 251.9 273 51.6
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.6e-64 250.8 246 55.3
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 2.7e-64 250.0 186 63.4
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 2.7e-64 250.0 186 63.4
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 3.5e-64 249.6 153 75.8
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.8e-63 247.3 248 55.6
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 8.7e-63 245.0 161 70.2
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.5e-62 244.2 175 67.4
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 1.9e-62 243.8 246 55.7
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 3.3e-62 243.0 231 63.6
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 4.3e-62 242.7 269 49.4
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.4e-62 241.9 250 51.6
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.6e-61 240.7 166 66.3
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.6e-61 240.7 175 66.9
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.1e-60 238.0 251 50.2
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.1e-60 238.0 203 60.1
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.8e-60 237.3 266 50.0
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.1e-60 236.5 197 57.9
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 4.0e-60 236.1 197 57.9
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 4.0e-60 236.1 197 57.9
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.0e-60 236.1 166 66.3
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 6.9e-60 235.3 206 56.3
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 6.9e-60 235.3 270 50.4
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.2e-59 234.6 151 72.2
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.2e-59 234.6 151 72.2
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.5e-59 234.2 163 68.1
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 2.6e-59 233.4 152 71.1
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 2.6e-59 233.4 149 71.8
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 3.4e-59 233.0 167 64.1
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 3.4e-59 233.0 270 50.0
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 3.4e-59 233.0 294 46.3
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 3.4e-59 233.0 166 65.7
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 2.2e-58 230.3 155 67.1
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 2.9e-58 229.9 168 63.1
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 2.9e-58 229.9 168 63.1
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 3.8e-58 229.6 161 65.8
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.4e-57 227.6 185 58.4
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.9e-57 227.3 268 48.9
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 2.5e-57 226.9 185 61.1
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 4.2e-57 226.1 185 61.1
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.2e-56 224.6 155 67.1
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 2.1e-56 223.8 197 56.3
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 3.5e-56 223.0 256 57.8
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 6.0e-56 222.2 158 67.1
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 6.0e-56 222.2 311 44.7
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 6.0e-56 222.2 311 44.7
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 7.9e-56 221.9 164 64.0
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 1.3e-55 221.1 173 60.1
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 6.7e-55 218.8 188 60.6
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 1.1e-54 218.0 147 68.7
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 1.9e-54 217.2 174 62.6
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 2.5e-54 216.9 176 61.4
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.3e-54 216.5 172 59.3
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 7.4e-54 215.3 175 57.7
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.3e-53 214.5 140 68.6
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.3e-53 214.5 156 62.8
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.3e-53 214.5 240 46.2
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.2e-53 213.8 156 62.8
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.8e-53 212.6 161 64.0
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 4.8e-53 212.6 172 58.7
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 4.8e-53 212.6 172 58.7
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 4.8e-53 212.6 172 58.7
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 4.8e-53 212.6 172 58.7
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 6.3e-53 212.2 165 59.4
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.1e-52 211.5 187 54.0
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.1e-52 211.5 140 68.6
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 1.4e-52 211.1 173 60.7
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.4e-52 211.1 181 58.0
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 2.4e-52 210.3 253 49.8
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 4.1e-52 209.5 144 69.4
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 5.3e-52 209.1 164 58.5
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.2e-51 208.0 279 42.7
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.2e-51 208.0 152 65.1
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 2.0e-51 207.2 181 57.5
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 4.5e-51 206.1 146 63.7
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 5.9e-51 205.7 168 58.3
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.3e-50 204.5 153 58.8
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 3.8e-50 203.0 312 40.7
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 5.0e-50 202.6 259 45.2
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.1e-49 201.4 105 89.5
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 2.5e-49 200.3 288 43.1
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 7.2e-49 198.7 234 46.6
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 1.2e-48 198.0 154 60.4
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 1.6e-48 197.6 215 53.0
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 6.1e-48 195.7 146 59.6
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 5.1e-47 192.6 145 60.0
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 2.5e-46 190.3 204 51.5
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.4e-46 188.7 156 57.1
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 4.5e-43 179.5 175 51.4
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 7.7e-43 178.7 199 48.2
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 2.9e-42 176.8 178 50.6
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.4e-41 174.5 217 45.2
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-41 174.5 173 50.9
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 7.2e-41 172.2 123 67.5
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 2.7e-40 170.2 157 53.5
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 3.6e-40 169.9 133 58.6
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.1e-38 164.9 133 57.1
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 2.0e-38 164.1 156 53.2
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 4.4e-38 162.9 103 72.8
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 8.2e-37 158.7 135 51.9
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.7e-34 151.0 174 45.4
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 2.2e-34 150.6 171 43.9
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 3.2e-33 146.7 94 70.2
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 9.4e-33 145.2 132 53.8
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 6.1e-32 142.5 134 51.5
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 5.2e-31 139.4 99 61.6
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 4.5e-27 126.3 133 42.9
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 5.9e-27 125.9 98 60.2
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.0e-26 125.2 99 59.6
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 3.2e-25 120.2 105 55.2
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.2e-25 119.0 95 56.8
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 1.6e-24 117.9 140 46.4
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 8.0e-24 115.5 95 56.8
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.2e-21 107.5 68 70.6
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.1e-20 105.1 59 74.6
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-20 105.1 80 61.2
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 7.0e-20 102.4 68 67.6
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 3.2e-17 93.6 103 50.5
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 5.5e-17 92.8 76 57.9
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 7.2e-17 92.4 59 72.9
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 2.1e-16 90.9 179 36.3
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 2.1e-16 90.9 75 53.3
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 6.1e-16 89.4 107 45.8
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 4.0e-15 86.7 69 60.9
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.1e-12 78.6 77 51.9
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.8e-12 77.8 89 46.1
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 1.7e-10 71.2 62 53.2
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 4.7e-08 63.2 47 59.6
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 1.0e-07 62.0 36 72.2
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 4.0e-07 60.1 50 58.0
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 8.9e-07 58.9 102 37.3


User provided reference genes

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