Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 0.0e+00 1216.1 606 100.0
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 0.0e+00 1202.6 607 99.0
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 0.0e+00 1160.2 606 95.9
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 0.0e+00 1159.1 606 95.9
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 0.0e+00 1159.1 606 95.9
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 0.0e+00 1087.4 606 90.1
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 1.6e-301 1038.9 606 86.3
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 9.5e-291 1003.0 606 82.7
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 1.2e-288 996.1 607 82.2
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 1.9e-254 882.5 601 73.5
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 1.0e-236 823.5 478 87.0
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 2.9e-231 805.4 607 67.5
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 3.6e-221 771.9 478 81.4
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 5.9e-176 621.7 614 55.5
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 1.1e-174 617.5 606 55.3
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 4.3e-174 615.5 606 54.8
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 9.2e-169 597.8 606 53.5
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 5.0e-167 592.0 609 52.9
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 5.0e-167 592.0 616 52.1
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 8.6e-167 591.3 609 51.9
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 3.3e-166 589.3 607 52.4
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 6.2e-165 585.1 609 53.0
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 2.7e-160 569.7 619 49.9
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 2.3e-159 566.6 609 53.2
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 2.3e-159 566.6 607 50.9
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 1.9e-158 563.5 626 49.5
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 1.1e-153 547.7 609 51.4
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 2.4e-153 546.6 610 50.3
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 2.1e-152 543.5 584 51.9
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 5.1e-151 538.9 608 50.2
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 1.1e-148 531.2 616 49.4
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 1.4e-148 530.8 610 50.2
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 3.1e-148 529.6 654 47.6
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 2.2e-146 523.5 608 49.3
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 2.4e-145 520.0 614 49.3
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 7.1e-145 518.5 628 47.0
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 9.3e-145 518.1 611 48.6
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 1.2e-144 517.7 607 49.1
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.3e-143 514.2 610 49.7
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 2.3e-143 513.5 619 48.6
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 4.3e-142 509.2 615 48.9
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 2.1e-141 506.9 523 53.7
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 4.8e-141 505.8 622 46.3
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 8.1e-141 505.0 638 45.8
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 6.9e-140 501.9 627 46.9
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 1.2e-139 501.1 626 46.6
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 4.4e-139 499.2 634 46.1
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 2.2e-138 496.9 625 46.6
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 4.9e-138 495.7 610 47.4
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 4.9e-138 495.7 570 48.2
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 8.4e-138 495.0 616 46.9
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 1.1e-137 494.6 625 46.6
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 1.4e-137 494.2 624 45.7
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 3.2e-137 493.0 621 45.4
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 2.1e-136 490.3 613 47.3
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 7.9e-136 488.4 613 47.0
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 3.9e-135 486.1 614 46.3
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 6.6e-135 485.3 622 45.2
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 8.7e-135 485.0 627 45.3
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 5.6e-134 482.3 627 45.0
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 5.6e-134 482.3 627 45.0
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 7.4e-134 481.9 687 45.6
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 1.5e-131 474.2 631 44.7
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 2.0e-131 473.8 483 55.3
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 1.7e-130 470.7 622 45.5
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 3.8e-130 469.5 628 43.3
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 4.9e-130 469.2 623 46.1
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 6.4e-130 468.8 652 43.9
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 2.1e-128 463.8 640 43.8
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 2.1e-128 463.8 656 42.5
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 2.1e-128 463.8 714 39.9
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 2.7e-128 463.4 628 44.4
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 4.0e-124 449.5 607 42.5
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 6.5e-122 442.2 271 82.7
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 1.5e-115 421.0 618 41.4
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 8.2e-109 398.7 610 39.8
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 3.2e-105 386.7 608 41.3
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 1.4e-100 371.3 657 39.3
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.7e-98 364.4 396 52.3
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 1.1e-94 351.7 475 45.1
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.9e-89 334.3 408 48.3
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 2.1e-88 330.9 369 50.1
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 3.3e-86 323.6 393 48.6
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 2.2e-85 320.9 329 54.1
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 3.5e-75 287.0 318 52.2
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 4.5e-75 286.6 279 56.3
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 2.5e-73 280.8 289 51.6
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 1.0e-71 275.4 321 51.1
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 8.3e-61 239.2 279 51.6
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 3.9e-50 203.8 226 53.1
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 5.6e-49 199.9 674 27.0
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 9.5e-49 199.1 339 38.9
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 4.7e-48 196.8 226 49.6
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 1.8e-47 194.9 236 45.8
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 4.9e-45 186.8 611 28.8
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 2.8e-40 171.0 101 82.2
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 4.7e-40 170.2 439 32.6
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 4.0e-39 167.2 273 40.3
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 2.4e-36 157.9 265 38.5
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 1.1e-31 142.5 433 29.6
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 2.4e-31 141.4 286 31.1
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 3.0e-26 124.4 139 54.7
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 7.3e-25 119.8 248 33.5
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 9.6e-25 119.4 139 50.4
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 2.8e-24 117.9 610 24.1
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 4.8e-24 117.1 121 47.9
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 2.4e-23 114.8 134 40.3
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 9.0e-23 112.8 116 47.4
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 2.6e-22 111.3 139 48.2
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 3.4e-22 110.9 136 39.0
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 4.5e-22 110.5 152 43.4
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 1.3e-21 109.0 162 34.6
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 5.4e-20 103.6 138 48.6
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 2.1e-19 101.7 125 50.4
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 2.1e-16 91.7 355 29.0
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 2.1e-16 91.7 137 40.9
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 6.9e-15 86.7 124 43.5
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 1.0e-10 72.8 101 46.5
PSO541G3330 Papaver somniferum HOM05D006061 ORTHO05D007450 6.7e-10 70.1 426 23.7
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 7.4e-09 66.6 95 45.3


User provided reference genes

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