Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 5.7e-101 370.9 190 100.0
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 7.2e-96 354.0 223 85.2
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 4.7e-95 351.3 190 97.4
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 4.7e-95 351.3 190 97.4
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 4.7e-95 351.3 190 97.4
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 1.1e-91 340.1 191 93.2
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 7.5e-85 317.4 190 88.4
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 4.9e-84 314.7 186 89.2
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 3.0e-81 305.4 190 83.2
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 6.2e-79 297.7 190 83.2
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 7.5e-77 290.8 196 80.6
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 1.7e-76 289.7 188 80.3
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 1.0e-73 280.4 194 78.9
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 1.0e-65 253.8 189 70.9
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 1.1e-59 233.8 189 66.1
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 4.2e-59 231.9 194 64.9
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 2.7e-58 229.2 185 63.8
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 6.0e-58 228.0 192 60.9
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 8.7e-57 224.2 186 61.8
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 2.5e-56 222.6 189 61.9
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 7.3e-56 221.1 179 64.2
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 1.3e-55 220.3 168 67.9
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 1.3e-55 220.3 193 60.6
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 1.6e-55 219.9 190 61.1
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 2.1e-55 219.5 176 62.5
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 3.6e-55 218.8 188 59.6
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 4.8e-55 218.4 168 67.9
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 4.8e-55 218.4 182 64.3
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 8.1e-55 217.6 204 58.3
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 1.1e-54 217.2 184 60.9
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 1.4e-54 216.9 191 58.1
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 1.4e-54 216.9 193 59.6
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 1.8e-54 216.5 193 59.6
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 2.4e-54 216.1 193 60.1
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 3.1e-54 215.7 187 61.0
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 5.3e-54 214.9 192 61.5
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 6.9e-54 214.5 184 61.4
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 9.0e-54 214.2 193 59.1
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 2.0e-53 213.0 193 58.5
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 2.6e-53 212.6 187 61.0
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 3.4e-53 212.2 186 60.8
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 3.4e-53 212.2 178 62.4
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 7.6e-53 211.1 180 59.4
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 7.6e-53 211.1 177 64.4
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 9.9e-53 210.7 172 62.2
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 1.3e-52 210.3 193 58.0
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 2.2e-52 209.5 192 59.9
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 2.9e-52 209.1 191 59.7
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 2.9e-52 209.1 192 57.3
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 2.9e-52 209.1 193 58.5
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 4.9e-52 208.4 182 59.9
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 4.9e-52 208.4 185 60.5
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 4.9e-52 208.4 186 60.2
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 6.4e-52 208.0 175 61.1
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 1.1e-51 207.2 172 62.2
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 1.1e-51 207.2 185 58.9
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 1.4e-51 206.8 188 59.6
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 2.4e-51 206.1 193 58.5
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 5.4e-51 204.9 188 56.9
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 7.1e-51 204.5 191 57.6
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 1.2e-50 203.8 189 58.7
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 2.1e-50 203.0 189 56.6
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 4.6e-50 201.8 156 64.7
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 4.6e-50 201.8 175 60.6
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 6.0e-50 201.4 172 61.0
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 5.1e-49 198.4 182 57.1
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 5.1e-49 198.4 175 61.1
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 5.1e-49 198.4 184 57.1
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 6.6e-49 198.0 137 69.3
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 2.5e-48 196.1 180 57.2
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 2.5e-48 196.1 172 57.0
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 3.3e-48 195.7 193 54.9
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 3.3e-48 195.7 194 53.1
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 2.8e-47 192.6 172 58.1
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 3.6e-47 192.2 168 58.9
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 8.1e-47 191.0 196 53.1
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 1.4e-46 190.3 201 54.2
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 1.8e-46 189.9 158 58.2
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 3.1e-46 189.1 189 51.3
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 4.0e-46 188.7 197 53.8
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 5.3e-46 188.3 191 53.9
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 5.3e-46 188.3 141 61.0
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 6.9e-46 188.0 191 53.4
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 6.9e-46 188.0 146 61.6
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.2e-45 187.2 135 63.7
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.5e-45 186.8 142 61.3
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.4e-45 185.7 167 56.3
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 3.4e-45 185.7 172 54.7
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 1.7e-44 183.3 180 53.3
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 4.9e-44 181.8 159 56.0
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 6.4e-44 181.4 166 54.2
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 1.1e-43 180.6 297 40.1
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 4.6e-42 175.3 196 52.0
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 2.5e-40 169.5 139 56.1
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 1.5e-37 160.2 128 64.8
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 5.8e-37 158.3 157 47.1
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 1.1e-35 154.1 128 64.8
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 1.4e-35 153.7 92 80.4
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 2.5e-35 152.9 177 53.1
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 6.7e-33 144.8 157 45.9
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 5.7e-32 141.7 95 69.5
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 7.4e-32 141.4 157 45.2
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 6.3e-31 138.3 113 53.1
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 1.5e-29 133.7 92 67.4
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 1.3e-28 130.6 135 49.6
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 4.2e-27 125.6 122 52.5
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 3.9e-25 119.0 117 48.7
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 1.4e-19 100.5 100 45.0
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 2.0e-16 90.1 109 41.3
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 2.2e-15 86.7 152 38.2
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 8.2e-15 84.7 131 36.6
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 3.1e-14 82.8 62 59.7
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 1.8e-09 67.0 65 61.5
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 1.7e-07 60.5 120 27.5
MCO16G209 Micromonas commoda HOM05D007042 ORTHO05D008441 5.3e-06 55.5 105 31.4


User provided reference genes

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