Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 9.6e-251 869.8 463 100.0
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.5e-243 845.9 464 98.3
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 6.9e-233 810.4 463 95.0
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 6.5e-231 803.9 463 92.9
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.1e-230 803.1 465 94.4
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.9e-222 775.8 463 92.0
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 2.1e-213 745.7 463 85.1
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 4.6e-213 744.6 463 86.6
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.4e-212 743.0 469 85.1
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 2.8e-210 735.3 459 83.4
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 2.2e-207 725.7 463 83.6
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.6e-205 719.5 463 82.9
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.7e-205 718.8 463 84.0
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 2.0e-203 712.6 467 81.8
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.1e-195 686.8 470 79.6
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.7e-186 656.4 475 72.4
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.5e-184 648.7 475 72.6
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 3.5e-176 622.1 480 70.0
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 8.9e-172 607.4 481 67.8
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 3.4e-171 605.5 483 68.7
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.7e-160 569.3 482 65.6
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.9e-158 563.1 468 68.8
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.5e-150 537.0 486 59.7
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 3.3e-150 535.8 482 62.2
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.3e-150 535.8 486 59.7
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.1e-149 533.1 490 59.4
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 2.1e-149 533.1 490 59.4
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 4.7e-149 531.9 496 58.7
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 2.3e-148 529.6 491 57.8
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 3.7e-146 522.3 487 57.7
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.3e-143 513.8 487 56.9
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 3.0e-143 512.7 487 56.7
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 3.6e-141 505.8 490 54.7
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 8.1e-141 504.6 495 55.8
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 4.0e-140 502.3 495 55.8
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 8.9e-140 501.1 487 55.9
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.2e-139 500.7 389 72.5
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.5e-139 500.4 488 55.1
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 2.0e-139 500.0 482 58.3
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 2.6e-139 499.6 488 56.1
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 7.6e-139 498.0 493 55.8
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 9.9e-139 497.7 481 58.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 4.9e-138 495.4 456 58.1
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 8.4e-138 494.6 488 54.9
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.1e-137 494.2 452 58.4
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 3.2e-137 492.7 491 56.4
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 2.7e-136 489.6 488 54.5
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 3.5e-136 489.2 483 55.7
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.3e-135 487.3 488 56.4
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.9e-134 483.4 495 55.2
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 3.3e-134 482.6 495 55.8
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 3.3e-134 482.6 500 54.6
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 5.6e-134 481.9 500 55.4
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.8e-133 479.6 499 53.5
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 8.1e-133 478.0 488 56.4
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.1e-132 477.6 489 54.6
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.0e-132 475.7 486 53.7
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 6.9e-132 474.9 474 54.4
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.5e-131 473.8 490 53.9
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.5e-131 473.8 489 52.8
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 3.4e-131 472.6 499 53.1
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.9e-130 469.5 500 52.2
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.8e-130 469.2 482 52.5
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.4e-129 467.2 492 53.5
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.2e-128 464.2 490 53.1
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.1e-128 463.4 485 52.8
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.1e-128 463.4 490 52.7
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.6e-128 462.2 487 53.0
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.0e-127 461.1 490 52.7
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-127 460.7 476 52.5
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-127 460.7 472 53.4
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.7e-127 460.3 489 54.0
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.3e-127 459.9 475 55.4
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 3.0e-127 459.5 516 53.1
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 7.4e-126 454.9 501 51.1
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 9.6e-126 454.5 487 52.6
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.6e-126 454.5 455 54.1
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.3e-125 454.1 488 54.9
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.3e-125 454.1 444 56.1
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.8e-125 453.0 501 51.1
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.8e-125 452.2 518 50.2
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 6.2e-125 451.8 446 57.4
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.1e-124 451.1 457 55.1
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 3.1e-124 449.5 476 52.3
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.3e-124 448.7 499 50.3
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 6.9e-124 448.4 487 50.7
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.2e-123 447.6 489 50.5
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.2e-123 447.6 437 56.3
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 4.5e-123 445.7 487 51.1
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 7.6e-123 444.9 488 50.8
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 7.6e-123 444.9 486 50.6
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.3e-122 444.1 497 53.3
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 3.8e-122 442.6 491 51.7
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.4e-121 440.7 492 49.8
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.4e-121 440.7 444 56.3
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 9.3e-121 438.0 508 50.4
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.0e-119 434.5 487 51.1
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 3.9e-119 432.6 504 48.6
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 6.7e-119 431.8 498 52.8
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.6e-117 427.2 491 52.7
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 8.1e-117 424.9 437 53.8
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.1e-116 422.9 453 54.1
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.2e-115 421.0 427 54.6
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.5e-115 420.6 488 50.4
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.7e-114 417.2 491 49.5
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.2e-114 416.8 489 48.5
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 7.1e-113 411.8 408 54.7
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 2.1e-112 410.2 444 52.5
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 3.5e-112 409.5 443 53.0
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 4.6e-112 409.1 487 51.3
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 6.0e-112 408.7 579 43.5
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.3e-111 407.5 494 48.6
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.9e-110 403.7 545 45.1
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.5e-110 403.3 498 48.6
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.8e-109 399.8 509 47.7
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 4.8e-109 399.1 454 50.9
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.4e-108 397.5 519 46.1
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 3.9e-103 379.4 400 50.0
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 3.3e-102 376.3 450 48.4
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 2.2e-101 373.6 493 45.6
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.4e-100 370.2 385 50.9
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 4.1e-100 369.4 443 49.7
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 6.9e-100 368.6 450 48.9
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-99 367.5 536 43.3
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.0e-99 367.1 535 43.2
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.0e-98 364.8 484 43.6
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 8.5e-98 361.7 448 50.2
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 7.2e-97 358.6 474 46.6
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 3.9e-95 352.8 472 44.7
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 3.8e-90 336.3 488 43.2
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.0e-86 323.9 448 44.2
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 4.4e-86 322.8 396 50.5
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 4.8e-85 319.3 500 42.4
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 4.2e-81 306.2 420 42.9
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 1.4e-79 301.2 477 39.2
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 5.7e-78 295.8 217 66.4
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.7e-77 293.1 484 41.1
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.6e-75 287.7 217 65.0
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.5e-75 286.2 407 45.7
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 4.2e-73 279.6 292 49.3
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 2.1e-72 277.3 340 47.9
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 8.8e-71 271.9 291 48.5
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.3e-69 268.1 482 37.8
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.8e-69 266.9 290 47.9
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.8e-68 264.2 223 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 3.1e-68 263.5 274 48.5
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.2e-54 218.4 177 59.3
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 1.1e-41 175.3 257 38.5
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.1e-39 168.7 135 61.5
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.4e-37 159.5 157 54.8
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 1.9e-36 157.9 258 41.1
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 4.1e-36 156.8 211 45.5
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 4.6e-35 153.3 234 34.6
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 4.6e-35 153.3 316 38.3
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 8.9e-31 139.0 186 36.0
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 3.0e-26 124.0 94 59.6
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.4e-23 115.2 147 44.9
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 7.1e-20 102.8 84 57.1
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 2.1e-16 91.3 77 57.1
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 6.2e-16 89.7 125 46.4
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 5.8e-14 83.2 118 44.1
BolC1t02302H Brassica oleracea HOM05D026626 ORTHO05D027483 1.4e-12 78.6 138 41.3
C01p23590 Brassica napus HOM05D026626 ORTHO05D027483 3.2e-12 77.4 138 40.6
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 9.6e-09 65.9 93 41.9
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 6.2e-08 63.2 50 58.0
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.2e-06 58.9 54 50.0


User provided reference genes

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