Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 1.6e-289 998.8 549 100.0
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 5.4e-269 930.6 564 92.9
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 3.4e-231 805.1 564 82.6
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 9.1e-216 753.8 552 78.1
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.2e-180 637.1 514 74.1
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 5.2e-163 578.6 598 63.7
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 2.0e-162 576.6 603 63.2
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 6.0e-159 565.1 562 64.9
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 7.3e-157 558.1 616 61.4
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.3e-140 504.2 615 58.2
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 6.2e-140 501.9 607 59.0
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 7.6e-138 495.0 520 61.3
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 6.0e-135 485.3 626 55.3
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.4e-128 464.2 627 53.3
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 5.7e-125 452.2 608 53.6
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.8e-123 447.2 614 52.1
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.0e-121 441.4 511 59.7
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.7e-121 440.7 506 58.5
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 7.1e-120 435.3 513 59.3
BcaNung02354 Brassica carinata HOM05D003739 ORTHO05D003996 2.7e-119 433.3 322 81.7
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 6.5e-113 412.1 507 59.4
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 4.2e-112 409.5 504 59.3
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 2.3e-102 377.1 441 56.5
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.3e-97 361.3 225 87.6
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.9e-81 307.0 253 69.2
Sp5g17020 Schrenkiella parvula HOM05D003739 ORTHO05D003996 7.5e-77 292.4 393 54.7
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.4e-75 288.1 506 43.3
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 8.0e-63 245.7 645 36.3
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.7e-41 174.9 352 39.2
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 4.0e-38 163.7 283 43.1
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 3.8e-36 157.1 278 40.6
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.1e-35 155.6 303 38.3
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.2e-34 152.1 262 39.7
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.6e-34 151.8 336 36.9
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 2.1e-34 151.4 269 40.5
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 7.8e-34 149.4 215 43.7
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 3.0e-33 147.5 273 40.3
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 6.6e-33 146.4 224 42.0
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 8.7e-33 146.0 301 36.5
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 8.7e-33 146.0 287 36.6
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 3.3e-32 144.1 274 39.1
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 5.6e-32 143.3 338 34.9
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 5.6e-32 143.3 214 42.5
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 9.6e-32 142.5 326 36.2
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 1.3e-31 142.1 262 40.5
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.6e-31 141.7 265 40.8
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 2.8e-31 141.0 311 39.2
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.8e-31 141.0 280 39.3
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.6e-31 140.6 568 28.3
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 4.8e-31 140.2 374 32.6
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 8.1e-31 139.4 279 36.6
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 1.8e-30 138.3 303 37.0
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 5.3e-30 136.7 265 39.2
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 6.9e-30 136.3 343 34.7
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 9.0e-30 136.0 544 28.3
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 1.2e-29 135.6 298 36.9
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 4.4e-29 133.7 267 37.5
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 7.6e-29 132.9 291 36.8
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 9.9e-29 132.5 272 37.9
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.9e-28 131.0 229 39.7
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 2.9e-28 131.0 163 45.4
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 2.9e-28 131.0 297 36.0
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 3.8e-28 130.6 239 38.1
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 6.4e-28 129.8 275 35.3
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 1.1e-27 129.0 296 33.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 1.1e-27 129.0 366 31.1
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 3.2e-27 127.5 415 29.2
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 4.2e-27 127.1 284 38.4
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 4.2e-27 127.1 265 37.7
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.2e-26 125.6 268 37.3
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 2.1e-26 124.8 275 37.8
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.1e-26 124.8 281 35.9
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 2.1e-26 124.8 293 34.5
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.1e-26 124.8 212 39.2
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 2.1e-26 124.8 279 34.4
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 2.7e-26 124.4 264 40.2
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 3.5e-26 124.0 267 35.6
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 3.5e-26 124.0 276 37.0
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 3.5e-26 124.0 137 49.6
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.3e-25 122.1 259 34.7
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 3.0e-25 120.9 289 34.9
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.5e-24 118.6 417 29.3
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 3.3e-24 117.5 294 31.0
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 3.3e-24 117.5 267 33.0
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 9.6e-24 115.9 483 27.5
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.6e-23 115.2 295 32.5
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.6e-23 115.2 198 38.9
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 2.8e-23 114.4 408 27.0
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 3.6e-23 114.0 464 29.3
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.8e-23 113.6 265 35.8
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.2e-23 113.2 432 29.6
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.4e-22 112.1 234 36.3
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 2.4e-22 111.3 277 35.4
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 2.4e-22 111.3 207 36.7
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 3.1e-22 110.9 309 33.7
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 3.1e-22 110.9 265 32.8
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 5.3e-22 110.2 269 33.1
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 9.0e-22 109.4 507 28.2
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.2e-21 109.0 284 32.4
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.0e-21 108.2 628 27.1
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.0e-21 108.2 573 28.1
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.6e-21 107.8 258 34.1
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 4.5e-21 107.1 267 34.1
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.5e-21 107.1 258 34.1
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 9.9e-21 105.9 287 33.8
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.3e-20 105.5 285 34.0
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.3e-20 105.5 524 26.0
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 4.2e-19 100.5 233 36.5
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 5.5e-19 100.1 105 48.6
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 7.1e-19 99.8 166 43.4
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 7.1e-19 99.8 247 35.2
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.2e-18 99.0 266 36.1
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 2.1e-18 98.2 172 35.5
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.7e-18 97.8 269 35.7
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.7e-18 97.8 62 74.2
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 4.6e-18 97.1 287 33.8
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 7.9e-18 96.3 222 32.9
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.0e-17 95.9 259 31.7
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.3e-17 95.5 566 24.9
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 3.9e-17 94.0 217 36.4
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 5.1e-17 93.6 216 31.9
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 6.7e-17 93.2 266 30.8
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 3.3e-16 90.9 260 31.2
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 9.6e-16 89.4 165 37.0
CARHR106830 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.3e-15 89.0 82 54.9
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 8.1e-15 86.3 170 37.6
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 3.1e-14 84.3 88 40.9
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.9e-14 83.2 243 30.0
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 6.9e-14 83.2 622 24.4
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 2.0e-13 81.6 212 33.0
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 4.5e-13 80.5 165 34.5
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 1.7e-12 78.6 116 38.8
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.7e-12 78.6 200 30.0
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 1.4e-11 75.5 120 39.2
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 3.2e-11 74.3 120 34.2
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.2e-10 72.4 539 23.4
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.5e-10 70.9 123 42.3
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 7.9e-10 69.7 145 34.5
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.0e-09 67.8 166 29.5
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.1e-08 65.9 148 33.1
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.1e-08 65.9 148 33.1
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 1.5e-08 65.5 646 24.3
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 1.5e-08 65.5 76 51.3
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-08 64.3 257 30.0
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 9.6e-08 62.8 106 32.1
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.1e-07 61.6 219 30.6
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 4.1e-06 57.4 75 50.7


User provided reference genes

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