Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 5.2e-61 237.7 130 100.0
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 5.0e-40 167.9 115 85.2
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 7.3e-39 164.1 98 93.9
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.3e-35 153.3 92 93.5
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 1.3e-35 153.3 94 94.7
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 2.4e-34 149.1 92 91.3
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 2.4e-34 149.1 92 89.1
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 4.1e-34 148.3 92 91.3
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 7.0e-34 147.5 90 92.2
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.2e-33 146.7 92 89.1
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 6.0e-33 144.4 91 89.0
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 3.0e-32 142.1 92 85.9
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 1.5e-31 139.8 93 87.1
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 4.3e-31 138.3 91 87.9
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 5.6e-31 137.9 91 85.7
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 7.5e-28 127.5 90 78.9
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 9.2e-26 120.6 80 88.8
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.7e-25 119.0 97 70.1
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.5e-23 112.5 92 72.8
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 2.4e-21 105.9 93 64.5
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 2.0e-20 102.8 93 64.5
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 2.6e-20 102.4 95 62.1
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.3e-19 100.1 92 59.8
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.3e-19 100.1 97 58.8
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.3e-19 100.1 92 59.8
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.3e-19 100.1 92 59.8
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 1.3e-19 100.1 91 59.3
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.7e-19 99.8 97 58.8
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 2.2e-19 99.4 117 50.4
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 2.2e-19 99.4 92 57.6
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 2.9e-19 99.0 97 56.7
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 3.8e-19 98.6 92 63.0
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 1.4e-18 96.7 92 57.6
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 4.2e-18 95.1 91 56.0
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 7.1e-18 94.4 92 56.5
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 9.2e-18 94.0 97 55.7
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.2e-17 93.6 92 58.7
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.6e-17 93.2 92 57.6
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 1.6e-17 93.2 92 56.5
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 2.1e-17 92.8 92 57.6
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 2.1e-17 92.8 93 60.2
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 3.5e-17 92.0 92 55.4
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.6e-17 91.7 93 59.1
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.3e-16 90.1 99 52.5
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.7e-16 89.7 92 54.3
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.3e-16 89.4 92 56.5
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.3e-16 89.4 92 56.5
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.3e-16 89.4 92 56.5
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 3.9e-16 88.6 92 52.2
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 6.6e-16 87.8 89 57.3
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 8.7e-16 87.4 91 57.1
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 1.5e-15 86.7 99 60.6
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 1.9e-15 86.3 102 51.0
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 3.3e-15 85.5 98 51.0
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.3e-15 85.1 92 55.4
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 2.1e-14 82.8 96 52.1
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 2.1e-14 82.8 94 56.4
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 2.8e-14 82.4 96 53.1
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 2.8e-14 82.4 93 55.9
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 3.6e-14 82.0 92 52.2
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 4.8e-14 81.6 94 51.1
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 4.8e-14 81.6 92 53.3
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 8.1e-14 80.9 90 51.1
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 8.1e-14 80.9 91 49.5
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 1.1e-13 80.5 90 52.2
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 1.1e-13 80.5 92 47.8
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 1.4e-13 80.1 95 50.5
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 1.4e-13 80.1 93 50.5
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 3.1e-13 79.0 98 50.0
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 4.0e-13 78.6 92 50.0
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 6.9e-13 77.8 90 53.3
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 6.9e-13 77.8 90 53.3
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 9.0e-13 77.4 114 45.6
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 9.0e-13 77.4 99 49.5
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 2.0e-12 76.3 93 50.5
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 2.0e-12 76.3 93 50.5
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 2.0e-12 76.3 93 50.5
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 4.4e-12 75.1 93 52.7
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 4.4e-12 75.1 91 51.6
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 5.8e-12 74.7 92 51.1
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 5.8e-12 74.7 83 51.8
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 9.9e-12 73.9 92 48.9
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 2.2e-11 72.8 124 40.3
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 2.9e-11 72.4 98 45.9
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 3.8e-11 72.0 92 50.0
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 3.8e-11 72.0 90 52.2
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 6.4e-11 71.2 91 47.3
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 1.1e-10 70.5 93 50.5
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.4e-10 70.1 95 48.4
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 2.4e-10 69.3 90 45.6
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 4.2e-10 68.6 93 46.2
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 9.3e-10 67.4 93 47.3
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 1.6e-09 66.6 93 49.5
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 2.7e-09 65.9 90 44.4
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 2.7e-09 65.9 92 47.8
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 3.5e-09 65.5 76 51.3
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 3.5e-09 65.5 83 48.2
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 4.6e-09 65.1 112 41.1
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 6.0e-09 64.7 99 50.5
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 1.7e-08 63.2 92 43.5
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.0e-08 62.4 92 42.4
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 6.6e-08 61.2 88 47.7
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 8.7e-08 60.8 100 43.0
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 8.7e-08 60.8 49 61.2
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 1.9e-07 59.7 88 46.6
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 3.3e-07 58.9 92 42.4
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 3.3e-07 58.9 90 48.9
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 7.3e-07 57.8 85 47.1
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 7.3e-07 57.8 98 44.9
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 9.6e-07 57.4 53 56.6
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 1.6e-06 56.6 61 55.7
Os01g0551400 Oryza sativa ssp. japonica HOM05D006766 ORTHO05D008534 8.1e-06 54.3 97 45.4
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 8.1e-06 54.3 94 45.7


User provided reference genes

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