Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1649.4 833 100.0
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1647.5 833 99.8
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1535.8 833 95.2
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1535.8 833 95.2
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1531.9 832 95.0
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1528.5 840 93.9
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1477.2 854 88.8
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1455.7 853 88.6
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1455.7 853 88.6
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1455.7 853 88.6
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1455.7 853 88.6
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1450.6 847 87.7
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1449.5 848 88.0
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1439.9 836 88.5
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1430.6 827 88.6
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1417.1 852 84.6
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1372.8 832 84.4
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1356.3 836 82.1
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1320.8 852 79.9
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1317.4 816 81.7
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1317.0 829 80.1
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 853 79.6
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1315.1 835 80.5
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1314.3 828 80.6
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 853 79.4
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1309.3 852 79.0
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1308.1 849 79.3
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 848 79.4
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1301.6 839 79.3
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 853 78.8
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 837 80.4
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 847 79.0
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 834 79.0
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1295.4 794 82.7
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 835 79.0
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1293.9 842 79.5
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1293.9 834 79.0
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1293.5 840 79.3
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 835 78.9
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1291.2 854 78.3
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 819 79.7
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1283.9 836 79.5
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 835 79.0
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 837 78.5
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 834 79.7
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1280.4 835 78.9
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 837 79.6
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1278.5 840 78.0
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1277.3 834 78.2
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1277.3 840 78.6
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 839 77.7
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 849 78.0
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1275.4 791 81.9
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1274.2 837 78.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1273.5 830 78.0
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 834 78.1
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1271.5 836 77.9
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1271.5 838 78.0
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 834 77.9
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1268.8 836 78.9
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1268.4 841 77.5
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1268.4 846 77.8
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1268.4 845 78.7
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 846 77.4
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 889 75.0
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1266.1 834 77.7
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 847 77.2
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1264.6 843 77.1
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1264.2 827 77.9
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1263.8 825 78.9
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1263.8 815 79.4
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 845 76.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 835 77.4
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 860 76.0
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 838 78.2
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1258.8 868 74.7
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1256.9 869 72.2
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1256.9 795 80.4
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1254.2 787 80.1
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1254.2 806 78.9
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1251.5 827 77.6
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1250.3 849 76.2
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1249.2 836 78.5
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1247.3 822 78.6
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1246.9 820 78.7
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1246.5 826 77.2
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1245.3 820 79.3
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1245.3 834 77.2
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 822 78.6
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1244.6 826 77.2
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1244.2 819 78.1
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1240.3 813 78.6
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1236.9 844 76.9
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1236.5 827 77.9
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1236.1 834 76.6
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 793 79.7
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1233.4 834 77.0
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1231.1 823 76.2
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1230.3 823 77.3
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1226.5 799 80.0
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1223.0 830 77.2
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1218.0 841 74.8
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1217.2 841 74.8
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 870 71.5
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 836 77.0
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 790 78.1
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1210.3 805 76.5
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1207.6 785 77.7
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1207.6 781 79.6
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1206.4 818 76.7
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1204.9 832 74.8
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1204.5 785 78.5
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1204.5 874 72.5
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1198.7 868 73.0
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1198.0 820 75.2
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1194.9 812 75.5
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1184.1 786 77.0
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1182.9 768 80.2
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1181.8 783 76.9
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1180.2 762 80.4
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1177.5 812 75.9
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1177.5 835 73.5
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1176.4 821 75.4
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1174.8 879 71.4
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1174.1 829 74.1
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1168.7 817 73.6
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1168.3 833 69.4
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1165.6 695 83.6
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1158.3 785 76.8
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1155.6 760 77.9
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1148.7 798 74.9
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1146.3 810 72.0
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1140.6 834 73.3
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1140.2 788 74.7
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1127.1 793 75.4
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1124.4 804 71.8
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1117.1 807 71.0
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1115.5 817 70.4
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1107.4 889 67.0
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1100.5 734 77.9
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1091.6 786 71.4
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 2.5e-286 988.8 814 67.3
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 3.1e-268 928.7 594 74.2
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 2.5e-265 919.1 575 78.4
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 1.3e-261 906.7 547 83.9
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 4.4e-246 855.1 593 73.0
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.7e-245 852.0 844 59.6
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 7.0e-244 847.8 514 81.1
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.5e-161 574.3 708 50.7
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 1.9e-140 504.2 451 59.0
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 9.8e-137 491.9 355 76.9
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.9e-116 424.5 312 70.2
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 2.1e-107 394.4 315 72.1
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.9e-97 359.0 405 52.1
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.9e-87 328.2 580 44.8
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 4.6e-86 323.6 227 72.2
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 1.5e-60 238.8 137 78.8
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.6e-59 235.3 156 76.9
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 6.7e-45 186.8 163 57.1
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 9.4e-39 166.4 688 25.9
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 8.5e-32 143.3 76 86.8
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 7.2e-31 140.2 468 27.1
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 9.4e-31 139.8 472 26.9
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.6e-25 122.5 63 90.5
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.9e-24 118.2 96 64.6
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.1e-23 116.3 412 28.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.5e-23 114.0 472 26.9
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.2e-20 106.3 64 71.9
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-16 92.4 266 28.2
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-16 91.3 335 29.0
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.2e-13 80.9 131 43.5
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 7.5e-12 77.0 76 50.0
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.8e-10 72.4 136 33.8
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-08 63.5 102 38.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 9.5e-07 60.1 38 76.3


User provided reference genes

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