Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 1.9e-148 529.3 284 100.0
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 1.8e-138 496.1 311 88.4
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 2.7e-123 445.7 311 81.0
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-122 443.0 312 80.4
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 5.2e-122 441.4 312 80.1
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 1.7e-101 373.2 318 71.7
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 4.6e-86 322.0 352 58.0
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.9e-76 290.0 343 57.7
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 5.6e-76 288.5 342 57.3
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 5.6e-76 288.5 341 56.9
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 7.3e-76 288.1 342 57.3
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 7.3e-76 288.1 342 57.3
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 3.6e-75 285.8 343 57.7
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 4.1e-71 272.3 330 56.4
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 6.0e-70 268.5 342 52.0
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 6.8e-66 255.0 340 51.8
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 8.9e-66 254.6 346 50.9
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 4.0e-58 229.2 339 50.1
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 5.3e-58 228.8 347 48.4
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 2.2e-56 223.4 353 48.2
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.1e-50 204.5 341 47.5
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 6.9e-50 201.8 338 45.3
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 1.9e-44 183.7 276 47.5
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 2.7e-38 163.3 260 45.8
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 2.5e-31 140.2 371 38.5
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 7.2e-31 138.7 365 38.6
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.3e-29 134.4 366 38.3
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 6.7e-29 132.1 396 36.6
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-28 131.3 370 36.5
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 5.7e-28 129.0 415 33.5
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 7.4e-28 128.6 385 36.4
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 9.7e-28 128.3 431 33.2
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 9.7e-28 128.3 414 33.8
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 1.3e-27 127.9 361 38.8
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 2.8e-27 126.7 355 38.3
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 2.8e-27 126.7 355 38.3
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 6.3e-27 125.6 413 33.9
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 6.3e-27 125.6 413 33.9
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 6.3e-27 125.6 398 34.9
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 8.2e-27 125.2 399 34.8
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 6.9e-26 122.1 413 34.9
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.2e-25 121.3 413 34.1
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-25 120.9 372 36.0
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.5e-25 120.9 411 34.5
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 4.5e-25 119.4 358 37.4
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 4.5e-25 119.4 358 37.4
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 1.0e-24 118.2 398 33.9
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.9e-24 116.7 428 32.2
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 6.5e-24 115.5 410 33.7
BolC7t43237H Brassica oleracea HOM05D004305 ORTHO05D005159 5.5e-23 112.5 66 90.9
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 7.9e-22 108.6 399 32.3
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.3e-21 107.1 432 31.5
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 2.6e-17 93.6 308 32.8
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 1.0e-16 91.7 308 31.8
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 5.0e-16 89.4 186 34.9
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 4.2e-15 86.3 210 36.2
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 7.2e-15 85.5 146 41.8
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 7.2e-15 85.5 301 29.6
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.1e-14 84.0 188 35.1
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 7.9e-14 82.0 180 37.2
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 1.0e-13 81.6 361 29.4
C07p27070 Brassica napus HOM05D004305 ORTHO05D005159 5.2e-13 79.3 53 73.6
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 5.2e-13 79.3 151 38.4
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 5.2e-13 79.3 178 37.1
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 8.8e-13 78.6 173 38.2
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 2.0e-12 77.4 144 37.5
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 2.0e-12 77.4 200 33.5
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.3e-12 76.6 186 33.9
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 3.3e-12 76.6 158 37.3
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 5.7e-12 75.9 186 33.9
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 7.4e-12 75.5 68 52.9
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.3e-11 74.7 186 34.4
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 1.3e-11 74.7 193 33.7
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.3e-11 74.7 189 34.4
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 2.2e-11 73.9 179 32.4
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.2e-11 73.9 189 32.3
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.2e-11 73.9 256 34.0
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 2.8e-11 73.6 209 33.0
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 3.7e-11 73.2 62 53.2
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 3.7e-11 73.2 287 30.7
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 4.8e-11 72.8 170 31.8
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 4.8e-11 72.8 60 63.3
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 8.2e-11 72.0 378 27.8
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 1.4e-10 71.2 191 33.0
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.4e-10 71.2 180 33.3
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 1.4e-10 71.2 171 36.3
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 1.8e-10 70.9 63 54.0
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 5.3e-10 69.3 191 31.4
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 5.3e-10 69.3 148 34.5
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 5.3e-10 69.3 190 32.1
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 9.1e-10 68.6 53 60.4
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 9.1e-10 68.6 53 60.4
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.6e-09 67.8 166 34.9
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.6e-09 67.8 53 66.0
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 2.0e-09 67.4 63 49.2
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 2.0e-09 67.4 362 26.0
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 3.5e-09 66.6 147 32.7
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 4.5e-09 66.2 404 25.7
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 4.5e-09 66.2 160 34.4
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 4.5e-09 66.2 51 56.9
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 4.5e-09 66.2 187 31.6
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 7.7e-09 65.5 206 32.0
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.0e-08 65.1 60 55.0
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 1.0e-08 65.1 91 45.1
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.0e-08 65.1 169 35.5
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.3e-08 64.7 174 31.6
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.3e-08 64.7 48 68.8
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 1.3e-08 64.7 187 28.3
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 1.7e-08 64.3 304 28.0
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 1.7e-08 64.3 185 31.9
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 2.2e-08 63.9 383 26.9
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.9e-08 63.5 197 31.0
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 3.8e-08 63.2 161 34.2
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 3.8e-08 63.2 68 47.1
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 6.5e-08 62.4 66 54.5
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 6.5e-08 62.4 258 28.3
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 6.5e-08 62.4 351 27.4
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 1.9e-07 60.8 58 46.6
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.5e-07 60.5 57 54.4
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 2.5e-07 60.5 188 31.9
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.2e-07 60.1 249 29.7
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 3.2e-07 60.1 58 56.9
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 3.2e-07 60.1 351 27.9
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 4.2e-07 59.7 173 31.2
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 4.2e-07 59.7 57 54.4
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 5.5e-07 59.3 235 28.9
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 7.2e-07 58.9 247 27.1
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 9.4e-07 58.5 153 34.6
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 1.2e-06 58.2 376 25.3
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 1.6e-06 57.8 65 50.8
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 2.1e-06 57.4 182 28.6
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.7e-06 57.0 145 32.4
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 3.6e-06 56.6 346 26.6
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 4.7e-06 56.2 55 54.5


User provided reference genes

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