Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 2.4e-195 685.3 328 100.0
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 9.0e-195 683.3 328 99.7
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 1.4e-179 632.9 328 93.3
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 1.8e-166 589.3 335 86.0
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 2.6e-162 575.5 331 85.2
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.9e-160 569.3 332 84.6
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 2.5e-160 568.9 335 84.5
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 2.5e-160 568.9 331 84.9
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 2.5e-160 568.9 331 84.9
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.2e-159 566.6 330 83.3
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 2.1e-159 565.8 277 98.6
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 2.1e-159 565.8 277 98.6
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 3.6e-159 565.1 331 82.5
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 5.2e-158 561.2 303 90.8
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.7e-154 548.9 329 81.2
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 4.2e-152 541.6 277 93.5
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 1.8e-150 536.2 277 92.1
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 2.3e-150 535.8 278 93.2
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 9.2e-139 497.3 288 83.3
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.7e-124 449.9 292 72.3
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 3.7e-124 448.7 280 75.7
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 3.7e-124 448.7 292 71.9
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 4.1e-123 445.3 292 71.6
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 2.0e-122 443.0 280 75.0
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 9.5e-120 434.1 284 73.2
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 9.5e-120 434.1 281 73.0
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.2e-119 433.7 282 74.8
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 3.6e-119 432.2 280 72.5
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 6.2e-119 431.4 334 64.7
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 1.5e-117 426.8 281 73.7
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 2.9e-116 422.5 276 71.7
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 1.4e-115 420.2 280 71.8
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.9e-115 419.9 280 69.6
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 3.2e-115 419.1 284 71.8
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 4.6e-114 415.2 280 71.1
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 6.0e-114 414.8 280 69.6
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 7.8e-114 414.5 282 72.3
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 1.7e-113 413.3 296 66.6
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 1.7e-113 413.3 280 71.1
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 1.7e-113 413.3 281 70.1
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 5.1e-113 411.8 281 70.5
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 1.1e-112 410.6 279 69.9
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 1.5e-112 410.2 322 64.9
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 2.5e-112 409.5 282 68.1
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 5.6e-112 408.3 331 60.7
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 9.5e-112 407.5 280 69.3
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.2e-111 407.1 282 70.2
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 2.8e-111 406.0 280 68.9
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 4.7e-111 405.2 281 69.8
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 1.1e-110 404.1 293 66.9
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.4e-110 403.7 272 76.5
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.4e-110 403.7 301 63.1
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 2.3e-110 402.9 282 68.1
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 4.0e-110 402.1 283 68.6
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 4.0e-110 402.1 283 68.6
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 4.0e-110 402.1 291 65.6
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 1.5e-109 400.2 280 68.9
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 9.9e-109 397.5 268 67.9
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 4.9e-108 395.2 278 66.9
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 1.1e-107 394.0 281 66.2
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 1.1e-107 394.0 280 67.5
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 1.4e-107 393.7 279 66.7
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 3.2e-107 392.5 280 69.6
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 4.1e-107 392.1 280 66.1
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 5.4e-107 391.7 279 66.3
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 7.1e-107 391.3 282 65.6
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.6e-106 390.2 290 64.1
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 1.6e-106 390.2 280 66.1
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 2.7e-106 389.4 280 65.7
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 3.5e-106 389.0 280 65.0
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 3.5e-106 389.0 283 65.0
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.3e-105 387.1 283 65.7
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 8.6e-105 384.4 284 63.4
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 8.6e-105 384.4 284 63.4
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 5.6e-104 381.7 316 60.4
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 1.2e-103 380.6 278 66.9
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 2.8e-103 379.4 281 66.5
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 5.8e-101 371.7 238 74.8
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 2.2e-100 369.8 249 72.3
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.9e-99 366.7 316 57.6
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 2.4e-99 366.3 262 66.8
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.0e-97 360.9 392 48.7
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 1.3e-97 360.5 273 63.4
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.3e-97 359.8 305 58.0
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 2.3e-97 359.8 236 72.9
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 1.1e-96 357.5 280 63.6
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 1.5e-96 357.1 354 52.0
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 2.5e-96 356.3 308 56.5
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.6e-95 353.6 396 47.7
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 2.0e-93 346.7 283 60.4
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 9.9e-93 344.4 322 55.3
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 8.4e-92 341.3 282 62.8
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.9e-91 340.1 281 62.3
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 3.2e-91 339.3 282 62.4
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 2.1e-90 336.7 289 58.8
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 6.0e-90 335.1 256 61.7
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 1.3e-89 334.0 270 61.1
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.1e-86 324.3 280 58.6
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.6e-85 319.7 237 64.1
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 1.1e-75 287.7 274 54.0
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.4e-75 287.3 304 49.0
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 5.5e-75 285.4 270 54.4
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 5.5e-75 285.4 186 72.0
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 2.7e-74 283.1 188 69.7
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 1.8e-73 280.4 268 52.6
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 1.5e-72 277.3 198 65.7
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 6.9e-70 268.5 326 46.9
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.5e-69 267.3 187 66.3
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 2.2e-63 246.9 252 47.6
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 1.3e-60 237.7 257 45.9
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 2.5e-59 233.4 142 76.1
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 7.4e-56 221.9 211 55.0
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 2.2e-55 220.3 254 43.7
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.4e-54 217.6 191 59.2
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.7e-39 167.5 91 84.6
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 9.1e-38 161.8 114 66.7
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 9.1e-38 161.8 114 66.7
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.0e-33 148.3 86 79.1
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 3.1e-30 136.7 95 69.5
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 3.5e-29 133.3 114 58.8
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 7.7e-29 132.1 95 69.5
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.0e-28 131.7 90 67.8
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 2.1e-26 124.0 97 61.9
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 2.8e-26 123.6 82 72.0
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 3.6e-26 123.2 66 90.9
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 5.2e-25 119.4 94 59.6
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.8e-23 113.6 75 72.0
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 1.1e-22 111.7 112 50.0
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 7.0e-22 109.0 94 59.6
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 2.3e-20 104.0 107 48.6
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 6.6e-20 102.4 72 69.4
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 5.6e-19 99.4 61 70.5
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 4.7e-18 96.3 49 79.6
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 3.0e-17 93.6 51 80.4
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.9e-11 74.3 57 59.6
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.1e-10 70.9 46 67.4
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 3.6e-10 70.1 38 76.3
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 4.7e-10 69.7 35 77.1
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 8.9e-09 65.5 65 52.3
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 2.6e-08 63.9 33 75.8
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 2.6e-08 63.9 33 75.8
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 3.4e-08 63.5 55 49.1
CsaV3_1G007140 Cucumis sativus L. HOM05D002609 ORTHO05D002820 1.1e-06 58.5 158 28.5
PGR083G1276 Punica granatum HOM05D002609 ORTHO05D002820 1.4e-06 58.2 141 29.8


User provided reference genes

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