Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p46570 Brassica napus HOM05D003506 ORTHO05D004063 2.8e-163 578.6 297 100.0
BraA06t27531Z Brassica rapa HOM05D003506 ORTHO05D004063 1.3e-160 569.7 297 98.3
BcaC06g34429 Brassica carinata HOM05D003506 ORTHO05D004063 1.1e-130 470.3 361 72.3
C07p28600 Brassica napus HOM05D003506 ORTHO05D004063 1.1e-130 470.3 361 72.3
BolC7t43398H Brassica oleracea HOM05D003506 ORTHO05D004063 1.1e-130 470.3 361 72.3
BcaC06g31546 Brassica carinata HOM05D003506 ORTHO05D004063 2.4e-109 399.4 356 66.3
BcaB07g30440 Brassica carinata HOM05D003506 ORTHO05D004063 1.3e-94 350.5 408 53.4
A02p29260 Brassica napus HOM05D003506 ORTHO05D004063 1.9e-82 310.1 321 58.6
BraA02t07955Z Brassica rapa HOM05D003506 ORTHO05D004063 1.9e-82 310.1 321 58.6
Thhalv10000742m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 6.7e-80 301.6 366 51.1
C02p46460 Brassica napus HOM05D003506 ORTHO05D004063 1.1e-79 300.8 321 57.3
BolC2t10698H Brassica oleracea HOM05D003506 ORTHO05D004063 1.8e-77 293.5 321 56.7
Carub.0008s0251 Capsella rubella HOM05D003506 ORTHO05D004063 6.5e-75 285.0 327 53.8
AL8G13190 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 1.9e-74 283.5 376 48.7
CARHR176510 Cardamine hirsuta HOM05D003506 ORTHO05D004063 1.2e-73 280.8 370 49.7
CARHR176610 Cardamine hirsuta HOM05D003506 ORTHO05D004063 9.7e-71 271.2 326 51.2
AL8G13340 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 1.0e-67 261.2 329 49.2
AT5G45510 Arabidopsis thaliana HOM05D003506 ORTHO05D004063 1.1e-63 247.7 332 48.2
Thhalv10024294m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 4.7e-57 225.7 324 44.1
Carub.0008s0262 Capsella rubella HOM05D003506 ORTHO05D004063 1.0e-56 224.6 253 54.2
Aa31LG9G7510 Aethionema arabicum HOM05D003506 ORTHO05D004063 3.3e-55 219.5 341 45.7
AL7G35000 Arabidopsis lyrata HOM05D000432 ORTHO05D004063 8.5e-51 204.9 334 41.0
BcaNung04016 Brassica carinata HOM05D003506 ORTHO05D004063 2.1e-49 200.3 340 40.3
BcaC03g16771 Brassica carinata HOM05D003506 ORTHO05D004063 6.1e-49 198.7 239 54.4
THA.LOC104806185 Tarenaya hassleriana HOM05D003506 ORTHO05D004063 4.1e-45 186.0 341 40.2
AL7G35050 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 1.7e-43 180.6 303 40.6
THA.LOC109116396 Tarenaya hassleriana HOM05D003506 ORTHO05D004063 4.2e-42 176.0 305 40.3
AT4G19050 Arabidopsis thaliana HOM05D003506 ORTHO05D004063 2.7e-41 173.3 302 40.7
BcaNung04011 Brassica carinata HOM05D003506 ORTHO05D004063 8.0e-41 171.8 290 40.0
Carub.0007s2209 Capsella rubella HOM05D003506 ORTHO05D004063 1.4e-40 171.0 306 39.9
BraA01t01053Z Brassica rapa HOM05D003506 ORTHO05D004063 3.0e-40 169.9 268 41.0
BcaC09g51442 Brassica carinata HOM05D003506 ORTHO05D004063 1.5e-39 167.5 299 38.8
BolC1t01282H Brassica oleracea HOM05D003506 ORTHO05D004063 1.5e-39 167.5 299 38.8
A01p11060 Brassica napus HOM05D003506 ORTHO05D004063 2.0e-39 167.2 273 40.3
C01p13080 Brassica napus HOM05D003506 ORTHO05D004063 2.2e-38 163.7 268 40.3
CARHR225950 Cardamine hirsuta HOM05D003506 ORTHO05D004063 2.9e-35 153.3 293 38.2
Sp7g17770 Schrenkiella parvula HOM05D003506 ORTHO05D004063 5.0e-35 152.5 301 37.5
Aa31LG6G1760 Aethionema arabicum HOM05D003506 ORTHO05D004063 2.5e-34 150.2 258 39.5
Thhalv10024259m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 3.7e-30 136.3 275 39.3
THA.LOC104798470 Tarenaya hassleriana HOM05D002287 ORTHO05D004063 1.7e-14 84.3 126 40.5
Eucgr.F01009 Eucalyptus grandis HOM05D000101 ORTHO05D000089 7.3e-10 68.9 106 34.9
COL.COLO4_15511 Corchorus olitorius HOM05D003506 ORTHO05D004063 2.8e-09 67.0 83 48.2
Eucgr.F01021 Eucalyptus grandis HOM05D000101 ORTHO05D000089 3.6e-09 66.6 89 39.3
Gohir.D12G206300 Gossypium hirsutum HOM05D003506 ORTHO05D004063 3.6e-09 66.6 89 39.3
Gorai.008G221500 Gossypium raimondii HOM05D003506 ORTHO05D004063 3.6e-09 66.6 89 39.3
Nn7g37688 Nelumbo nucifera HOM05D003506 ORTHO05D004063 3.6e-09 66.6 113 36.3
Haze_19427 Corylus avellana HOM05D003506 ORTHO05D004063 4.7e-09 66.2 104 35.6
CSS0044487 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 6.2e-09 65.9 108 35.2
Cfa001536 Carpinus fangiana HOM05D003506 ORTHO05D004063 6.2e-09 65.9 103 36.9
Gohir.A12G203900 Gossypium hirsutum HOM05D003506 ORTHO05D004063 6.2e-09 65.9 89 39.3
Thecc.03G312300 Theobroma cacao HOM05D003506 ORTHO05D004063 6.2e-09 65.9 110 35.5
Nn1g03848 Nelumbo nucifera HOM05D003506 ORTHO05D004063 8.0e-09 65.5 108 34.3
CARHR177140 Cardamine hirsuta HOM05D000005 ORTHO05D010626 1.4e-08 64.7 96 38.5
COL.COLO4_37090 Corchorus olitorius HOM05D003506 ORTHO05D004063 1.4e-08 64.7 88 40.9
PGR083G2174 Punica granatum HOM05D000101 ORTHO05D000089 1.4e-08 64.7 123 30.9
QL12p010090 Quercus lobata HOM05D003506 ORTHO05D004063 1.8e-08 64.3 98 35.7
Ah.06g181860 Amaranthus hybridus HOM05D003506 ORTHO05D004063 2.3e-08 63.9 100 40.0
Aqoxy1G04134 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 2.3e-08 63.9 106 38.7
MD07G1243500 Malus domestica HOM05D000005 ORTHO05D000012 2.3e-08 63.9 103 38.8
Thecc.03G315800 Theobroma cacao HOM05D003506 ORTHO05D004063 2.3e-08 63.9 115 34.8
Eucgr.F00782 Eucalyptus grandis HOM05D000101 ORTHO05D000089 3.1e-08 63.5 89 40.4
Cc02_g12230 Coffea canephora HOM05D003506 ORTHO05D004063 5.2e-08 62.8 111 37.8
Aqoxy1G04135 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 6.8e-08 62.4 106 38.7
CSS0002170 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 6.8e-08 62.4 108 33.3
Dinv40460 Davidia involucrata HOM05D003506 ORTHO05D004063 6.8e-08 62.4 107 40.2
Eucgr.F01006 Eucalyptus grandis HOM05D000101 ORTHO05D000089 8.9e-08 62.0 92 38.0
MD07G1260700 Malus domestica HOM05D003506 ORTHO05D000012 1.2e-07 61.6 281 28.1
MD07G1261100 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-07 61.6 105 37.1
MD10G1137400 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-07 61.6 113 37.2
Eucgr.F01017 Eucalyptus grandis HOM05D000101 ORTHO05D000089 1.5e-07 61.2 89 37.1
Carub.0008s0293 Capsella rubella HOM05D000005 ORTHO05D010626 2.0e-07 60.8 85 40.0
Eucgr.B00443 Eucalyptus grandis HOM05D000101 ORTHO05D000089 2.0e-07 60.8 114 36.0
Ah.06g181800 Amaranthus hybridus HOM05D003506 ORTHO05D004063 2.6e-07 60.5 109 36.7
HanXRQChr01g0003761 Helianthus annuus HOM05D003506 ORTHO05D004063 2.6e-07 60.5 108 34.3
CAN.G641.75 Capsicum annuum HOM05D003506 ORTHO05D004063 3.4e-07 60.1 265 25.7
COL.COLO4_16912 Corchorus olitorius HOM05D003506 ORTHO05D004063 3.4e-07 60.1 287 24.7
PGR083G1147 Punica granatum HOM05D000101 ORTHO05D000089 3.4e-07 60.1 116 31.0
Thhalv10001165m.g Eutrema salsugineum HOM05D000005 ORTHO05D010626 4.4e-07 59.7 104 35.6
FAN10G3445 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.4e-07 59.7 92 41.3
Eucgr.F00823 Eucalyptus grandis HOM05D000101 ORTHO05D000089 5.8e-07 59.3 109 31.2
Eucgr.I00210 Eucalyptus grandis HOM05D000101 ORTHO05D000089 5.8e-07 59.3 92 33.7
Eucgr.L03230 Eucalyptus grandis HOM05D000101 ORTHO05D000089 5.8e-07 59.3 127 33.1
MD07G1243000 Malus domestica HOM05D000005 ORTHO05D000012 5.8e-07 59.3 103 36.9
AL8G14230 Arabidopsis lyrata HOM05D000005 ORTHO05D010626 7.5e-07 58.9 97 37.1
AL8G14370 Arabidopsis lyrata HOM05D000005 ORTHO05D010626 7.5e-07 58.9 97 37.1
MD10G1136400 Malus domestica HOM05D000005 ORTHO05D000012 7.5e-07 58.9 113 36.3
AL8G13580 Arabidopsis lyrata HOM05D000005 ORTHO05D010626 1.3e-06 58.2 96 35.4
CiPaw.12G027400 Carya illinoinensis HOM05D003506 ORTHO05D004063 1.7e-06 57.8 109 33.9
Thhalv10027412m.g Eutrema salsugineum HOM05D000005 ORTHO05D018471 1.7e-06 57.8 108 35.2
RcHm_v2.0_Chr3g0479451 Rosa chinensis HOM05D003506 ORTHO05D004063 1.7e-06 57.8 112 36.6
AL8G13740 Arabidopsis lyrata HOM05D000005 ORTHO05D010626 2.2e-06 57.4 85 40.0
EL10Ac4g07650 Beta vulgaris HOM05D003506 ORTHO05D004063 2.2e-06 57.4 154 31.8
EL10Ac4g08075 Beta vulgaris HOM05D000101 ORTHO05D000089 2.2e-06 57.4 146 29.5
DCAR_013527 Daucus carota HOM05D003506 ORTHO05D004063 2.2e-06 57.4 107 39.3
Eucgr.F01019 Eucalyptus grandis HOM05D000101 ORTHO05D000089 2.2e-06 57.4 72 41.7
Lj1A1215T59 Lonicera japonica HOM05D003506 ORTHO05D004063 2.2e-06 57.4 108 37.0
PGR102G2980 Punica granatum HOM05D000101 ORTHO05D000089 2.2e-06 57.4 121 28.1
Actinidia26982 Actinidia chinensis HOM05D003506 ORTHO05D004063 2.9e-06 57.0 109 31.2
MD08G1229600 Malus domestica HOM05D003506 ORTHO05D004063 2.9e-06 57.0 233 27.5
PGR102G2773 Punica granatum HOM05D000101 ORTHO05D000089 2.9e-06 57.0 93 32.3
CARHR177100 Cardamine hirsuta HOM05D000005 ORTHO05D010626 3.7e-06 56.6 97 34.0
Gohir.D11G295500 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.7e-06 56.6 85 42.4
Gorai.007G319000 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.7e-06 56.6 90 41.1
Hma1.2p1_2475F.1_g322790 Hydrangea macrophylla HOM05D003506 ORTHO05D004063 3.7e-06 56.6 98 37.8
PGR042G2042 Punica granatum HOM05D003506 ORTHO05D004063 3.7e-06 56.6 89 33.7
CARHR177030 Cardamine hirsuta HOM05D000005 ORTHO05D010626 4.9e-06 56.2 84 38.1
DCAR_009112 Daucus carota HOM05D003506 ORTHO05D004063 4.9e-06 56.2 103 37.9
Eucgr.G01856 Eucalyptus grandis HOM05D000101 ORTHO05D000089 4.9e-06 56.2 121 31.4
Gohir.D11G296000 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.9e-06 56.2 110 37.3
Potri.003G101000 Populus trichocarpa HOM05D003506 ORTHO05D004063 4.9e-06 56.2 107 35.5
Potri.018G145532 Populus trichocarpa HOM05D000101 ORTHO05D000089 4.9e-06 56.2 78 37.2
RhsimUnG0207500 Rhododendron simsii HOM05D003506 ORTHO05D004063 4.9e-06 56.2 107 33.6
Thecc.07G137200 Theobroma cacao HOM05D000101 ORTHO05D000089 4.9e-06 56.2 108 28.7
Haze_10017 Corylus avellana HOM05D000101 ORTHO05D002559 6.4e-06 55.8 104 34.6
Glyma.01G033200 Glycine max HOM05D000005 ORTHO05D000012 6.4e-06 55.8 84 41.7
Glyma.01G033300 Glycine max HOM05D000005 ORTHO05D000012 6.4e-06 55.8 84 41.7
QL08p018471 Quercus lobata HOM05D000101 ORTHO05D000089 6.4e-06 55.8 106 33.0
Actinidia11835 Actinidia chinensis HOM05D003506 ORTHO05D004063 8.3e-06 55.5 122 32.8


User provided reference genes

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