Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p45650 Brassica napus HOM05D008115 ORTHO05D010112 2.9e-58 228.4 119 100.0
C07p30110 Brassica napus HOM05D008115 ORTHO05D010112 7.1e-49 197.2 117 91.5
BolC7t43551H Brassica oleracea HOM05D008115 ORTHO05D010112 7.1e-49 197.2 117 91.5
BcaC06g34346 Brassica carinata HOM05D008115 ORTHO05D010112 3.2e-41 171.8 102 91.2
A09p22550 Brassica napus HOM05D008115 ORTHO05D010112 5.4e-41 171.0 105 84.8
BcaC04g21681 Brassica carinata HOM05D008115 ORTHO05D010112 7.1e-41 170.6 107 84.1
Thhalv10001038m.g Eutrema salsugineum HOM05D008115 ORTHO05D010112 3.5e-40 168.3 105 83.8
C09p28900 Brassica napus HOM05D008115 ORTHO05D010112 4.6e-40 167.9 105 83.8
Sp2g11610 Schrenkiella parvula HOM05D008115 ORTHO05D010112 7.9e-40 167.2 102 85.3
AT5G46795 Arabidopsis thaliana HOM05D008115 ORTHO05D010112 8.7e-39 163.7 105 80.0
A02p30340 Brassica napus HOM05D008115 ORTHO05D010112 1.1e-38 163.3 105 81.0
C02p47870 Brassica napus HOM05D008115 ORTHO05D010112 1.1e-38 163.3 105 81.0
BolC2t10820H Brassica oleracea HOM05D008115 ORTHO05D010112 1.1e-38 163.3 105 81.0
BraA02t08049Z Brassica rapa HOM05D008115 ORTHO05D010112 1.1e-38 163.3 105 81.0
Carub.0008s0112 Capsella rubella HOM05D008115 ORTHO05D010112 1.5e-38 162.9 105 80.0
AL8G11540 Arabidopsis lyrata HOM05D008115 ORTHO05D010112 3.3e-38 161.8 107 80.4
CARHR174700 Cardamine hirsuta HOM05D008115 ORTHO05D010112 3.3e-38 161.8 105 80.0
BcaB07g30820 Brassica carinata HOM05D008115 ORTHO05D010112 4.3e-38 161.4 103 81.6
BcaC03g16890 Brassica carinata HOM05D008115 ORTHO05D010112 4.8e-37 157.9 102 80.4
Aa31LG9G6090 Aethionema arabicum HOM05D008115 ORTHO05D010112 3.9e-31 138.3 102 71.6
BolC9t55752H Brassica oleracea HOM05D008115 ORTHO05D010112 4.3e-30 134.8 80 83.8
THA.LOC104806705 Tarenaya hassleriana HOM05D008115 ORTHO05D010112 3.1e-20 102.1 88 59.1
Sabra03G0061200 Salix brachista HOM05D001142 ORTHO05D003453 5.3e-20 101.3 101 54.5
Ciclev10012855m.g Citrus clementina HOM05D008115 ORTHO05D010112 6.5e-18 94.4 104 49.0
Potri.003G091600 Populus trichocarpa HOM05D008115 ORTHO05D010112 3.2e-17 92.0 101 51.5
PGR042G2453 Punica granatum HOM05D008115 ORTHO05D010112 1.1e-14 83.6 96 44.8
Prupe.5G036900 Prunus persica HOM05D008115 ORTHO05D010112 2.0e-14 82.8 98 50.0
Thecc.03G228100 Theobroma cacao HOM05D008115 ORTHO05D010112 3.3e-14 82.0 101 47.5
QL12p005248 Quercus lobata HOM05D008115 ORTHO05D010112 5.7e-14 81.3 92 51.1
QL12p005415 Quercus lobata HOM05D008115 ORTHO05D010112 5.7e-14 81.3 92 51.1
CiPaw.12G063600 Carya illinoinensis HOM05D008115 ORTHO05D010112 1.7e-13 79.7 106 46.2
Duzib205G0809 Durio zibethinus HOM05D008115 ORTHO05D010112 2.8e-13 79.0 85 49.4
Dinv28956 Davidia involucrata HOM05D000381 ORTHO05D010112 6.3e-13 77.8 102 42.2
FAN04G2182 Fragaria x ananassa HOM05D008115 ORTHO05D010112 8.2e-13 77.4 107 44.9
FAN18G3637 Fragaria x ananassa HOM05D008115 ORTHO05D010112 8.2e-13 77.4 107 44.9
Gorai.004G185300 Gossypium raimondii HOM05D008115 ORTHO05D010112 8.2e-13 77.4 103 45.6
Gohir.D08G177100 Gossypium hirsutum HOM05D008115 ORTHO05D010112 1.1e-12 77.0 103 45.6
Gohir.A08G156700 Gossypium hirsutum HOM05D008115 ORTHO05D010112 1.4e-12 76.6 103 44.7
FAN08G1703 Fragaria x ananassa HOM05D008115 ORTHO05D010112 3.1e-12 75.5 107 43.9
FAN13G1458 Fragaria x ananassa HOM05D008115 ORTHO05D010112 3.1e-12 75.5 107 43.9
CsaV3_3G049200 Cucumis sativus L. HOM05D008115 ORTHO05D010112 4.1e-12 75.1 93 47.3
Lj2g0018003 Lotus japonicus HOM05D008115 ORTHO05D010112 4.1e-12 75.1 100 45.0
Manes.15G181340 Manihot esculenta HOM05D008115 ORTHO05D010112 6.9e-12 74.3 94 46.8
Medtr5g030520 Medicago truncatula HOM05D008115 ORTHO05D010112 6.9e-12 74.3 106 40.6
Aqoxy3G02357 Aquilegia oxysepala HOM05D008115 ORTHO05D010112 9.1e-12 73.9 92 45.7
Sed0022703 Sechium edule HOM05D008115 ORTHO05D010112 1.2e-11 73.6 94 42.6
Psat2g136120 Pisum sativum HOM05D008115 ORTHO05D010112 2.0e-11 72.8 108 38.9
arahy.Tifrunner.gnm1.ann1.6THG3J Arachis hypogaea HOM05D008115 ORTHO05D010112 6.5e-10 67.8 98 40.8
arahy.Tifrunner.gnm1.ann1.FLG01L Arachis hypogaea HOM05D008115 ORTHO05D010112 6.5e-10 67.8 98 40.8
RcHm_v2.0_Chr7g0209671 Rosa chinensis HOM05D008115 ORTHO05D010112 2.5e-09 65.9 87 43.7
Glyma.09G204000 Glycine max HOM05D008115 ORTHO05D010112 5.5e-09 64.7 99 41.4
GSVIVG01013162001 Vitis vinifera HOM05D008115 ORTHO05D010112 9.4e-09 63.9 102 43.1
MELO3C030366.2 Cucumis melo HOM05D008115 ORTHO05D010112 4.7e-08 61.6 85 41.2
BraA09t37861Z Brassica rapa HOM05D008115 ORTHO05D010112 6.1e-08 61.2 105 42.9
Phvul.002G142000 Phaseolus vulgaris HOM05D008115 ORTHO05D010112 7.9e-08 60.8 93 38.7
EL10Ac5g12123 Beta vulgaris HOM05D008115 ORTHO05D010112 1.4e-07 60.1 106 32.1
TWI15G1224 Tripterygium wilfordii HOM05D008115 ORTHO05D010112 1.8e-07 59.7 86 43.0
TPR.G15446 Trifolium pratense HOM05D008115 ORTHO05D010112 3.9e-07 58.5 90 41.1
VMungo1215G1226 Vigna mungo HOM05D008115 ORTHO05D010112 2.0e-06 56.2 79 36.7
AUR62018718 Chenopodium quinoa HOM05D008115 ORTHO05D010112 3.3e-06 55.5 97 40.2
ECA246G5266 Erigeron canadensis HOM05D038245 ORTHO05D010112 4.4e-06 55.1 103 35.9
Sopen02g017350 Solanum pennellii HOM05D008614 ORTHO05D010420 4.4e-06 55.1 84 35.7


User provided reference genes

Program Settings