Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 4.1e-103 378.6 281 100.0
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 9.4e-100 367.5 282 98.6
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 7.7e-94 347.8 290 93.4
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 7.9e-91 337.8 290 92.1
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 5.2e-90 335.1 290 91.4
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 2.7e-83 312.8 299 82.6
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 1.6e-78 297.0 297 83.2
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 4.4e-73 278.9 296 81.8
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 4.5e-70 268.9 302 75.8
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 3.8e-69 265.8 284 82.0
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 5.0e-69 265.4 303 77.6
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 5.9e-62 241.9 322 67.1
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 3.4e-57 226.1 303 71.9
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 2.8e-51 206.5 290 69.7
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 4.7e-43 179.1 294 65.6
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 9.9e-41 171.4 261 71.6
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 9.9e-41 171.4 261 71.6
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 3.7e-40 169.5 304 62.8
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 4.1e-39 166.0 292 64.7
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 1.5e-36 157.5 293 62.1
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 7.3e-36 155.2 272 62.5
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 9.5e-36 154.8 284 64.4
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 9.5e-36 154.8 249 69.9
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 2.8e-35 153.3 290 62.4
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 8.1e-35 151.8 284 64.1
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 8.1e-35 151.8 276 63.8
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 2.4e-34 150.2 248 67.7
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 3.1e-34 149.8 284 63.4
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 8.9e-34 148.3 235 72.8
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 8.9e-34 148.3 282 64.9
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 1.2e-33 147.9 265 64.5
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 1.2e-33 147.9 260 66.2
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 5.8e-33 145.6 299 60.9
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 5.8e-33 145.6 284 50.0
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 7.6e-33 145.2 236 70.8
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 1.3e-32 144.4 299 60.5
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 1.3e-32 144.4 249 67.1
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 1.7e-32 144.1 300 61.7
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 2.2e-32 143.7 290 62.8
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 3.8e-32 142.9 274 61.3
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 3.8e-32 142.9 281 52.7
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 1.4e-31 141.0 234 70.9
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 1.9e-31 140.6 263 65.4
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 5.4e-31 139.0 243 69.5
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 5.4e-31 139.0 272 63.2
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 7.1e-31 138.7 228 72.4
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 9.2e-31 138.3 306 58.5
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 1.6e-30 137.5 298 60.1
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 3.5e-30 136.3 278 62.9
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 4.6e-30 136.0 273 63.7
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 4.6e-30 136.0 252 67.5
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 1.3e-29 134.4 225 72.4
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 1.3e-29 134.4 234 69.7
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 1.3e-29 134.4 280 62.9
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 1.7e-29 134.0 305 58.0
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 3.0e-29 133.3 329 55.3
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 3.0e-29 133.3 234 69.2
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 3.9e-29 132.9 328 54.9
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 8.7e-29 131.7 281 61.6
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.1e-28 131.3 264 63.3
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 1.5e-28 131.0 305 59.3
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 1.5e-28 131.0 231 63.6
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 1.5e-28 131.0 261 62.1
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 1.5e-28 131.0 198 74.7
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 2.5e-28 130.2 224 73.7
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 2.5e-28 130.2 292 59.6
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 2.5e-28 130.2 332 53.6
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 3.3e-28 129.8 244 47.5
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 5.6e-28 129.0 276 60.1
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 7.3e-28 128.6 189 81.5
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 1.6e-27 127.5 251 67.3
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 6.2e-27 125.6 281 61.6
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 6.2e-27 125.6 215 52.6
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 1.4e-26 124.4 307 56.7
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 1.4e-26 124.4 284 54.9
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 1.4e-26 124.4 267 59.2
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 1.4e-26 124.4 299 57.2
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 1.8e-26 124.0 225 70.2
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 2.4e-26 123.6 227 70.5
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 2.4e-26 123.6 262 64.9
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 3.1e-26 123.2 272 56.2
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 1.5e-25 120.9 197 74.6
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 4.4e-25 119.4 286 56.6
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 4.4e-25 119.4 257 64.2
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 4.4e-25 119.4 197 74.1
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 7.6e-25 118.6 280 59.3
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 9.9e-25 118.2 189 79.4
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 9.9e-25 118.2 215 70.7
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 1.3e-24 117.9 117 56.4
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 3.8e-24 116.3 143 50.3
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 8.4e-24 115.2 270 61.1
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 2.4e-23 113.6 260 60.4
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 3.2e-23 113.2 116 55.2
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 4.2e-23 112.8 273 60.1
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 4.2e-23 112.8 226 69.0
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 5.4e-23 112.5 139 48.9
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 9.3e-23 111.7 221 68.8
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 9.3e-23 111.7 141 50.4
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 2.1e-22 110.5 147 46.9
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 2.7e-22 110.2 258 47.3
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 3.5e-22 109.8 244 64.8
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 7.8e-22 108.6 228 66.2
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 2.5e-20 103.6 187 74.3
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 9.6e-20 101.7 116 52.6
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 1.3e-19 101.3 66 75.8
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 6.2e-19 99.0 245 62.0
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 6.2e-19 99.0 87 59.8
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.3e-18 95.9 118 50.0
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.0e-17 94.0 121 46.3
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 4.5e-17 92.8 197 70.1
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 9.9e-17 91.7 290 29.3
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 1.3e-16 91.3 94 58.5
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 2.1e-14 84.0 208 65.9
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.1e-13 79.3 46 84.8
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 8.1e-11 72.0 36 94.4
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 1.1e-10 71.6 85 44.7
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 1.4e-10 71.2 85 44.7
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 1.8e-10 70.9 58 56.9
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 4.5e-09 66.2 85 43.5
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 5.8e-09 65.9 59 54.2
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.6e-09 65.5 58 51.7
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 2.9e-08 63.5 59 52.5
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 4.9e-08 62.8 35 85.7
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 4.9e-08 62.8 128 33.6
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 4.9e-08 62.8 59 54.2
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 6.4e-08 62.4 58 50.0
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 6.4e-08 62.4 85 38.8
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 1.1e-07 61.6 58 48.3
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 1.1e-07 61.6 59 47.5
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 1.4e-07 61.2 58 48.3
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 1.9e-07 60.8 89 42.7
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 2.4e-07 60.5 114 33.3
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 4.2e-07 59.7 84 39.3
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 5.5e-07 59.3 85 38.8
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 7.1e-07 58.9 130 33.1
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.1e-07 58.9 130 33.1
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 7.1e-07 58.9 59 47.5
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 7.1e-07 58.9 120 35.0
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 1.6e-06 57.8 48 54.2
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 1.6e-06 57.8 84 39.3
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 2.1e-06 57.4 141 31.9
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 2.1e-06 57.4 148 31.8
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 2.7e-06 57.0 128 29.7
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 2.7e-06 57.0 42 66.7
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 6.0e-06 55.8 59 45.8
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 7.9e-06 55.5 162 29.0


User provided reference genes

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