Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p45110 Brassica napus HOM05D006677 ORTHO05D008348 0.0e+00 1548.9 778 100.0
BcaC06g34255 Brassica carinata HOM05D006677 ORTHO05D008348 0.0e+00 1479.2 789 94.8
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 0.0e+00 1473.8 773 96.6
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 0.0e+00 1469.1 782 94.8
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 0.0e+00 1466.4 782 94.6
Sp2g12115 Schrenkiella parvula HOM05D006677 ORTHO05D008348 0.0e+00 1381.3 793 87.6
Thhalv10000783m.g Eutrema salsugineum HOM05D006677 ORTHO05D008348 0.0e+00 1370.5 793 86.4
AL8G10640 Arabidopsis lyrata HOM05D006677 ORTHO05D008348 0.0e+00 1354.0 794 86.4
CARHR173970 Cardamine hirsuta HOM05D006677 ORTHO05D008348 0.0e+00 1338.6 795 85.0
AT5G47400 Arabidopsis thaliana HOM05D006677 ORTHO05D008348 0.0e+00 1337.4 796 84.9
Carub.0008s0038 Capsella rubella HOM05D006677 ORTHO05D008348 0.0e+00 1321.2 792 84.3
BcaC06g31392 Brassica carinata HOM05D006677 ORTHO05D008348 0.0e+00 1239.9 773 83.8
BcaC06g31390 Brassica carinata HOM05D006677 ORTHO05D008348 0.0e+00 1221.5 657 92.7
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 0.0e+00 1157.1 748 78.3
THA.LOC104806670 Tarenaya hassleriana HOM05D006677 ORTHO05D008348 1.3e-308 1062.8 795 69.1
COL.COLO4_37128 Corchorus olitorius HOM05D006677 ORTHO05D008348 4.8e-263 911.4 800 59.4
Thecc.03G248200 Theobroma cacao HOM05D006677 ORTHO05D008348 5.5e-259 897.9 800 59.0
Gorai.008G233700 Gossypium raimondii HOM05D006677 ORTHO05D008348 5.2e-257 891.3 797 58.7
CANSAT21G0792 Cannabis sativa HOM05D006677 ORTHO05D008348 1.5e-256 889.8 801 57.8
Gohir.D12G218100 Gossypium hirsutum HOM05D006677 ORTHO05D008348 5.7e-256 887.9 797 58.5
Gohir.A12G215500 Gossypium hirsutum HOM05D006677 ORTHO05D008348 5.0e-252 874.8 794 58.1
Atru.chr9.1276 Acer truncatum HOM05D006677 ORTHO05D008348 2.5e-251 872.5 799 56.8
Duzib068G0477 Durio zibethinus HOM05D006677 ORTHO05D008348 2.6e-248 862.4 800 57.5
RcHm_v2.0_Chr7g0203921 Rosa chinensis HOM05D006677 ORTHO05D008348 9.8e-248 860.5 795 57.4
Ciclev10018892m.g Citrus clementina HOM05D006677 ORTHO05D008348 3.7e-247 858.6 807 56.1
Manes.02G041400 Manihot esculenta HOM05D006677 ORTHO05D008348 2.9e-244 849.0 801 55.6
MD06G1053300 Malus domestica HOM05D006677 ORTHO05D008348 8.6e-244 847.4 805 55.5
Cfa012688 Carpinus fangiana HOM05D006677 ORTHO05D008348 1.5e-243 846.7 798 56.4
Haze_07944 Corylus avellana HOM05D006677 ORTHO05D008348 4.9e-239 831.6 857 52.4
Prupe.5G065400 Prunus persica HOM05D006677 ORTHO05D008348 5.4e-238 828.2 803 54.8
PGR031G0681 Punica granatum HOM05D006677 ORTHO05D008348 9.2e-238 827.4 796 53.4
Potri.001G155800 Populus trichocarpa HOM05D006677 ORTHO05D008348 4.5e-237 825.1 798 56.1
MD04G1060300 Malus domestica HOM05D006677 ORTHO05D008348 2.3e-236 822.8 808 54.1
FvH4_5g19410 Fragaria vesca HOM05D006677 ORTHO05D008348 2.9e-236 822.4 796 55.0
FAN04G1892 Fragaria x ananassa HOM05D006677 ORTHO05D008348 2.9e-236 822.4 796 54.8
FAN13G0013 Fragaria x ananassa HOM05D006677 ORTHO05D008348 2.9e-236 822.4 794 55.3
Hma1.2p1_0316F.1_g122840 Hydrangea macrophylla HOM05D006677 ORTHO05D008348 2.8e-234 815.8 801 53.1
FAN18G1193 Fragaria x ananassa HOM05D006677 ORTHO05D008348 3.6e-234 815.5 796 54.6
TWI60G0317 Tripterygium wilfordii HOM05D006677 ORTHO05D008348 3.6e-234 815.5 799 52.8
Duzib205G2017 Durio zibethinus HOM05D006677 ORTHO05D008348 4.7e-234 815.1 800 55.1
FAN08G3018 Fragaria x ananassa HOM05D006677 ORTHO05D008348 3.0e-233 812.4 796 54.8
CiPaw.12G050300 Carya illinoinensis HOM05D006677 ORTHO05D008348 8.9e-233 810.8 797 54.6
CSS0025591 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 3.2e-230 802.4 800 52.9
arahy.Tifrunner.gnm1.ann1.WU4RWF Arachis hypogaea HOM05D006677 ORTHO05D008348 4.1e-230 802.0 813 53.4
arahy.Tifrunner.gnm1.ann1.IBE8NF Arachis hypogaea HOM05D006677 ORTHO05D008348 2.7e-229 799.3 813 53.3
TAR374G0600 Trochodendron aralioides HOM05D006677 ORTHO05D008348 2.7e-229 799.3 808 53.1
Nitab4.5_0001381g0100 Nicotiana tabacum HOM05D006677 ORTHO05D008348 2.3e-228 796.2 790 52.5
CAN.G1178.20 Capsicum annuum HOM05D006677 ORTHO05D008348 3.9e-228 795.4 799 52.4
vmacro14066 Vaccinium macrocarpon HOM05D006677 ORTHO05D008348 3.9e-228 795.4 792 53.7
Lj2C223G6 Lonicera japonica HOM05D006677 ORTHO05D008348 6.6e-228 794.7 797 53.1
QL12p011426 Quercus lobata HOM05D006677 ORTHO05D008348 3.3e-227 792.3 856 51.4
Sopen08g026930 Solanum pennellii HOM05D006677 ORTHO05D008348 1.8e-225 786.6 791 51.7
Nn6g33880 Nelumbo nucifera HOM05D006677 ORTHO05D008348 2.6e-224 782.7 804 52.0
Rhsim07G0111300 Rhododendron simsii HOM05D006677 ORTHO05D008348 3.4e-224 782.3 799 53.7
Solyc08g078440.3 Solanum lycopersicum HOM05D006677 ORTHO05D008348 1.7e-223 780.0 791 51.6
Migut.A01134 Erythranthe guttata HOM05D006677 ORTHO05D008348 1.2e-221 773.9 796 50.6
CSS0006614 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 1.0e-220 770.8 800 51.4
Peaxi162Scf00209g00130 Petunia axillaris HOM05D006677 ORTHO05D008348 1.0e-220 770.8 793 51.8
Rhsim07G0110800 Rhododendron simsii HOM05D006677 ORTHO05D008348 1.3e-220 770.4 820 52.3
AUR62019973 Chenopodium quinoa HOM05D006677 ORTHO05D008348 3.0e-220 769.2 802 51.2
Ca_21980_v3 Cicer arietinum L. HOM05D006677 ORTHO05D008348 6.6e-220 768.1 793 50.7
AUR62007111 Chenopodium quinoa HOM05D006677 ORTHO05D008348 1.1e-219 767.3 802 51.4
SGA_v2.0_scaffold104G30177 Striga asiatica HOM05D006677 ORTHO05D008348 1.1e-219 767.3 810 48.8
MSTRG.12123 Avicennia marina HOM05D006677 ORTHO05D008348 9.5e-219 764.2 785 50.7
Sc22g0000980 Simmondsia chinensis HOM05D006677 ORTHO05D008348 1.6e-218 763.5 798 51.9
Cc08_g12180 Coffea canephora HOM05D006677 ORTHO05D008348 4.0e-217 758.8 790 50.4
DCAR_004989 Daucus carota HOM05D006677 ORTHO05D008348 4.4e-216 755.4 793 50.1
Manes.01G083200 Manihot esculenta HOM05D006677 ORTHO05D008348 9.9e-216 754.2 797 50.9
Nitab4.5_0002289g0120 Nicotiana tabacum HOM05D006677 ORTHO05D008348 2.2e-215 753.1 787 50.7
Lj4g0000262 Lotus japonicus HOM05D006677 ORTHO05D008348 3.7e-215 752.3 802 50.9
Hund14577 Selenicereus undatus HOM05D006677 ORTHO05D008348 4.1e-214 748.8 793 50.2
Aqoxy7G00821 Aquilegia oxysepala HOM05D006677 ORTHO05D008348 1.2e-213 747.3 811 49.6
HanXRQChr16g0501081 Helianthus annuus HOM05D006677 ORTHO05D008348 1.2e-213 747.3 794 49.9
Ah.12g054330 Amaranthus hybridus HOM05D006677 ORTHO05D008348 2.3e-212 743.0 804 50.1
Lalb_Chr05g0221161 Lupinus albus HOM05D006677 ORTHO05D008348 1.2e-210 737.3 787 49.8
Glyma.17G143800 Glycine max HOM05D006677 ORTHO05D008348 5.2e-209 731.9 792 51.6
EL10Ac5g12357 Beta vulgaris HOM05D006677 ORTHO05D008348 6.8e-209 731.5 795 49.9
Medtr4g100700 Medicago truncatula HOM05D006677 ORTHO05D008348 4.4e-208 728.8 802 48.8
SalBow6G5281 Salvia bowleyana HOM05D006677 ORTHO05D008348 1.9e-206 723.4 847 46.2
Dinv21656 Davidia involucrata HOM05D006677 ORTHO05D008348 9.2e-206 721.1 635 58.4
Lsat_1_v5_gn_6_18041 Lactuca sativa HOM05D006677 ORTHO05D008348 2.3e-204 716.5 794 48.0
HanXRQChr08g0227751 Helianthus annuus HOM05D006677 ORTHO05D008348 5.6e-203 711.8 790 47.6
VMungo0251G0668 Vigna mungo HOM05D006677 ORTHO05D008348 6.9e-201 704.9 791 50.3
Phvul.003G222500 Phaseolus vulgaris HOM05D006677 ORTHO05D008348 4.9e-199 698.7 788 49.9
Actinidia26803 Actinidia chinensis HOM05D006677 ORTHO05D008348 1.6e-197 693.7 640 55.9
Psat4g072920 Pisum sativum HOM05D006677 ORTHO05D008348 3.5e-197 692.6 777 49.0
ECA233G6125 Erigeron canadensis HOM05D006677 ORTHO05D008348 9.6e-195 684.5 737 48.8
CDE11G0086 Ceratophyllum demersum HOM05D006677 ORTHO05D008348 5.3e-185 652.1 785 45.2
HPP92_022463 Vanilla planifolia HOM05D006677 ORTHO05D008348 1.0e-180 637.9 806 43.5
Oeu017057.2 Olea europaea HOM05D006677 ORTHO05D008348 7.4e-179 631.7 824 45.4
Sabra01G0125500 Salix brachista HOM05D006677 ORTHO05D008348 2.6e-168 596.7 647 51.6
Eucgr.D02100 Eucalyptus grandis HOM05D006677 ORTHO05D008348 8.8e-164 581.6 591 52.8
Glyma.05G062000 Glycine max HOM05D006677 ORTHO05D008348 1.0e-151 541.6 594 50.5
ATR0057G118 Amborella trichopoda HOM05D006677 ORTHO05D008348 1.2e-141 508.1 804 38.7
Zm00001eb000330 Zea mays HOM05D006677 ORTHO05D008348 3.4e-131 473.4 790 38.6
unitig_21.g20314 Utricularia gibba HOM05D006677 ORTHO05D008348 1.9e-102 377.9 795 33.8
Pp3c19_23280 Physcomitrium patens HOM05D006677 ORTHO05D008348 2.1e-93 347.8 856 32.5
Actinidia10841 Actinidia chinensis HOM05D006677 ORTHO05D008348 1.8e-92 344.7 796 32.8
TPR.G36090 Trifolium pratense HOM05D006677 ORTHO05D008348 1.3e-82 312.0 409 43.5
AagrBONN_evm.TU.Sc2ySwM_228.2440 Anthoceros agrestis HOM05D006677 ORTHO05D008348 3.9e-79 300.4 862 28.9
TPR.G37689 Trifolium pratense HOM05D006677 ORTHO05D008348 2.5e-78 297.7 301 51.5
GSVIVG01006276001 Vitis vinifera HOM05D006677 ORTHO05D008348 2.1e-77 294.7 257 58.4
Cpa.g.sc3684.1 Carica papaya HOM05D006677 ORTHO05D008348 7.1e-73 279.6 255 56.9
DCAR_004979 Daucus carota HOM05D006677 ORTHO05D008348 4.8e-69 266.9 295 48.5
DCAR_004986 Daucus carota HOM05D006677 ORTHO05D008348 4.8e-69 266.9 294 48.3
GSVIVG01006275001 Vitis vinifera HOM05D006677 ORTHO05D000005 4.9e-66 256.9 255 54.5
TAR365G0661 Trochodendron aralioides HOM05D006677 ORTHO05D008348 1.2e-51 209.1 291 43.6
TAR629G1120 Trochodendron aralioides HOM05D006677 ORTHO05D008348 2.4e-36 158.3 158 53.8
DCAR_004983 Daucus carota HOM05D006677 ORTHO05D008348 1.7e-34 152.1 209 42.1
TAR633G2042 Trochodendron aralioides HOM05D006677 ORTHO05D008348 9.4e-33 146.4 177 45.2
DCAR_004974 Daucus carota HOM05D006677 ORTHO05D008348 2.7e-32 144.8 211 40.3
CBR_g16835 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-31 142.1 1041 21.5
Os10g0560500 Oryza sativa ssp. japonica HOM05D006677 ORTHO05D008348 1.4e-28 132.5 267 33.0
DCAR_004984 Daucus carota HOM05D006677 ORTHO05D008348 9.1e-28 129.8 87 69.0
CAN.G26.36 Capsicum annuum HOM05D006677 ORTHO05D008348 1.0e-23 116.3 169 40.2
BcaC06g34257 Brassica carinata HOM05D006677 ORTHO05D008348 1.8e-23 115.5 63 93.7
MCO13G224 Micromonas commoda HOM05D006677 ORTHO05D008348 5.3e-20 104.0 854 21.2
Cre06.g278126 Chlamydomonas reinhardtii HOM05D006677 ORTHO05D008348 2.2e-13 82.0 165 32.1
DCAR_004972 Daucus carota HOM05D006677 ORTHO05D008348 8.3e-13 80.1 122 41.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 9.1e-12 76.6 55 65.5
CAN.G1178.24 Capsicum annuum HOM05D006677 ORTHO05D008348 3.0e-07 61.6 68 45.6
ECA233G4789 Erigeron canadensis HOM05D006677 ORTHO05D008348 5.7e-06 57.4 50 54.0


User provided reference genes

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