Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 1.8e-48 195.7 106 100.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 7.2e-45 183.7 110 93.6
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 7.2e-45 183.7 110 93.6
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 9.5e-45 183.3 109 91.7
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 1.2e-44 183.0 109 92.7
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 3.6e-44 181.4 104 96.2
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 8.0e-44 180.3 109 90.8
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 8.0e-44 180.3 109 90.8
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 3.0e-43 178.3 109 89.9
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 1.5e-42 176.0 105 93.3
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 2.0e-42 175.6 100 93.0
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.4e-40 169.5 109 88.1
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.4e-40 169.5 109 88.1
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 1.4e-40 169.5 100 89.0
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 3.3e-37 158.3 100 87.0
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 9.8e-34 146.7 98 84.7
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 2.2e-33 145.6 95 84.2
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 1.4e-32 142.9 111 74.8
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 3.5e-31 138.3 96 81.2
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 6.2e-28 127.5 109 71.6
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 8.9e-27 123.6 98 74.5
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 2.7e-23 112.1 111 64.0
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 2.7e-23 112.1 111 62.2
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 3.0e-22 108.6 110 62.7
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 6.6e-22 107.5 100 60.0
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.1e-21 106.7 108 59.3
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 1.9e-21 105.9 100 62.0
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.5e-21 105.5 100 65.0
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 3.3e-21 105.1 98 66.3
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 4.3e-21 104.8 111 59.5
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.6e-20 102.8 100 62.0
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 1.6e-20 102.8 101 63.4
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.1e-20 102.4 111 60.4
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 2.1e-20 102.4 111 58.6
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 8.1e-20 100.5 111 55.9
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 1.4e-19 99.8 104 61.5
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 2.3e-19 99.0 111 61.3
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 3.1e-19 98.6 102 62.7
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 5.2e-19 97.8 102 63.7
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 5.2e-19 97.8 111 55.0
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 1.5e-18 96.3 100 64.0
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 2.0e-18 95.9 104 64.4
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 2.0e-18 95.9 109 58.7
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.3e-17 93.2 111 58.6
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.3e-17 93.2 111 58.6
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 1.7e-17 92.8 101 58.4
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 2.2e-17 92.4 98 56.1
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 2.2e-17 92.4 99 62.6
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.9e-17 92.0 111 59.5
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 2.9e-17 92.0 113 56.6
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.7e-17 91.7 109 59.6
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 3.7e-17 91.7 102 62.7
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 3.7e-17 91.7 109 57.8
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 3.7e-17 91.7 103 59.2
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 4.9e-17 91.3 111 56.8
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 4.9e-17 91.3 104 65.4
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 4.9e-17 91.3 104 65.4
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 6.4e-17 90.9 103 58.3
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 6.4e-17 90.9 113 54.9
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 8.3e-17 90.5 109 58.7
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.1e-16 90.1 109 58.7
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.1e-16 90.1 100 57.0
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 4.1e-16 88.2 100 56.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 5.4e-16 87.8 114 54.4
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 5.4e-16 87.8 98 59.2
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 7.1e-16 87.4 103 57.3
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 2.1e-15 85.9 101 58.4
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 2.7e-15 85.5 102 54.9
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 3.5e-15 85.1 111 54.1
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 3.5e-15 85.1 98 56.1
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 4.6e-15 84.7 109 54.1
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 6.0e-15 84.3 103 57.3
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 7.8e-15 84.0 93 55.9
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 7.8e-15 84.0 100 58.0
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 1.0e-14 83.6 111 53.2
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 1.7e-14 82.8 98 52.0
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 5.1e-14 81.3 108 53.7
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 5.1e-14 81.3 100 59.0
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.9e-13 79.3 110 54.5
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 3.3e-13 78.6 111 53.2
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 4.3e-13 78.2 111 51.4
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 5.6e-13 77.8 100 50.0
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 1.2e-12 76.6 98 50.0
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 1.2e-12 76.6 102 52.0
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 2.1e-12 75.9 100 51.0
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 2.8e-12 75.5 98 55.1
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 2.8e-12 75.5 102 52.0
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 3.6e-12 75.1 109 47.7
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 8.1e-12 73.9 92 47.8
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 8.1e-12 73.9 103 50.5
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 1.4e-11 73.2 100 51.0
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 2.3e-11 72.4 102 51.0
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 2.3e-11 72.4 98 49.0
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 3.1e-11 72.0 109 49.5
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 5.2e-11 71.2 102 50.0
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 6.8e-11 70.9 98 51.0
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 6.8e-11 70.9 90 54.4
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 6.8e-11 70.9 90 54.4
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.5e-10 69.7 109 48.6
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.3e-09 66.6 101 46.5
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 1.7e-09 66.2 102 52.0
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.9e-09 65.5 95 49.5
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 3.8e-09 65.1 101 45.5
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.9e-09 64.7 93 49.5
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 8.4e-09 63.9 56 62.5
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 8.4e-09 63.9 56 62.5
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 1.1e-08 63.5 101 46.5
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 1.4e-08 63.2 101 45.5
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.4e-08 63.2 83 53.0
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.4e-08 62.4 67 53.7
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.4e-08 62.4 92 48.9
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 2.4e-08 62.4 46 69.6
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.4e-08 62.4 66 60.6
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 3.2e-08 62.0 58 62.1
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 3.2e-08 62.0 95 43.2
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 4.1e-08 61.6 40 80.0
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 4.1e-08 61.6 40 80.0
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 7.1e-08 60.8 73 49.3
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 9.2e-08 60.5 54 61.1
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 9.2e-08 60.5 43 72.1
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 1.2e-07 60.1 103 45.6
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.2e-07 60.1 85 48.2
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 1.2e-07 60.1 59 61.0
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 1.2e-07 60.1 113 46.0
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 1.6e-07 59.7 98 43.9
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 2.1e-07 59.3 41 70.7
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 2.1e-07 59.3 44 68.2
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 2.7e-07 58.9 85 48.2
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 3.5e-07 58.5 90 48.9
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 3.5e-07 58.5 78 48.7
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 3.5e-07 58.5 62 56.5
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 3.5e-07 58.5 100 45.0
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 3.5e-07 58.5 109 44.0
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 3.5e-07 58.5 101 44.6
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 4.6e-07 58.2 56 58.9
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 4.6e-07 58.2 101 44.6
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 4.6e-07 58.2 86 47.7
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 4.6e-07 58.2 80 48.8
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 4.6e-07 58.2 96 44.8
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 6.0e-07 57.8 110 45.5
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 7.8e-07 57.4 96 42.7
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 7.8e-07 57.4 54 57.4
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 7.8e-07 57.4 80 50.0
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.0e-06 57.0 91 50.5
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 1.3e-06 56.6 57 52.6
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 1.3e-06 56.6 39 71.8
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 1.3e-06 56.6 43 65.1
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 1.3e-06 56.6 98 44.9
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 1.3e-06 56.6 39 71.8
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.7e-06 56.2 87 44.8
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 1.7e-06 56.2 62 54.8
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 1.7e-06 56.2 95 47.4
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.7e-06 56.2 101 47.5
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 2.3e-06 55.8 91 41.8
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.3e-06 55.8 87 44.8
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 2.3e-06 55.8 78 48.7
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.3e-06 55.8 88 47.7
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 3.0e-06 55.5 89 46.1
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 3.0e-06 55.5 101 41.6
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 3.9e-06 55.1 101 40.6
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 3.9e-06 55.1 101 40.6
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 3.9e-06 55.1 101 40.6
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 3.9e-06 55.1 95 42.1
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 3.9e-06 55.1 98 42.9
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 3.9e-06 55.1 101 38.6
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 5.1e-06 54.7 101 42.6
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 5.1e-06 54.7 78 48.7
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.1e-06 54.7 91 46.2
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 5.1e-06 54.7 98 42.9
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 6.6e-06 54.3 101 41.6
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 6.6e-06 54.3 117 40.2
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 6.6e-06 54.3 77 48.1
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 6.6e-06 54.3 95 42.1
HPP92_014491 Vanilla planifolia HOM05D006762 ORTHO05D003505 6.6e-06 54.3 106 44.3
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 8.6e-06 53.9 103 39.8
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 8.6e-06 53.9 40 65.0
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 8.6e-06 53.9 101 37.6
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 8.6e-06 53.9 101 37.6


User provided reference genes

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