Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p44940 Brassica napus HOM05D009070 ORTHO05D010560 1.2e-80 303.1 150 100.0
BraA06t27365Z Brassica rapa HOM05D009070 ORTHO05D010560 1.2e-80 303.1 150 100.0
BolC7t43665H Brassica oleracea HOM05D009070 ORTHO05D010560 2.7e-77 292.0 150 96.0
C07p31240 Brassica napus HOM05D009070 ORTHO05D010560 1.0e-76 290.0 150 95.3
BcaC06g31365 Brassica carinata HOM05D009070 ORTHO05D010560 5.6e-67 257.7 150 84.7
BcaC06g31339 Brassica carinata HOM05D009070 ORTHO05D010560 2.0e-64 249.2 150 80.7
BcaC06g31355 Brassica carinata HOM05D009070 ORTHO05D010560 1.1e-57 226.9 149 76.5
Sp2g12310 Schrenkiella parvula HOM05D009070 ORTHO05D010560 1.9e-54 216.1 150 72.0
Thhalv10001063m.g Eutrema salsugineum HOM05D009070 ORTHO05D010560 4.0e-49 198.4 150 64.0
C07p30530 Brassica napus HOM05D009070 ORTHO05D010560 2.7e-45 185.7 149 60.4
BcaC06g34305 Brassica carinata HOM05D009070 ORTHO05D010560 3.5e-45 185.3 150 60.0
BolC7t43595H Brassica oleracea HOM05D009070 ORTHO05D010560 3.5e-45 185.3 150 60.7
A06p45440 Brassica napus HOM05D009070 ORTHO05D010560 4.3e-43 178.3 151 59.6
BraA06t27412Z Brassica rapa HOM05D009070 ORTHO05D010560 2.1e-42 176.0 151 58.9
AT5G47600 Arabidopsis thaliana HOM05D009070 ORTHO05D010560 9.9e-40 167.2 126 64.3
AL8G10370 Arabidopsis lyrata HOM05D009070 ORTHO05D010560 1.4e-38 163.3 124 60.5
Carub.0008s0019 Capsella rubella HOM05D009070 ORTHO05D010560 1.9e-38 162.9 132 59.8
BcaC06g31338 Brassica carinata HOM05D009070 ORTHO05D010560 8.7e-36 154.1 132 59.1
CARHR173720 Cardamine hirsuta HOM05D009070 ORTHO05D010560 1.1e-35 153.7 124 57.3
BcaC06g31430 Brassica carinata HOM05D009070 ORTHO05D010560 4.3e-35 151.8 132 59.1
BcaC05g26794 Brassica carinata HOM05D009070 ORTHO05D010560 1.3e-34 150.2 117 67.5
CARHR173750 Cardamine hirsuta HOM05D009070 ORTHO05D010560 1.2e-32 143.7 114 57.0
BcaC03g16907 Brassica carinata HOM05D009070 ORTHO05D010560 5.8e-32 141.4 148 52.0
Aa31LG9G5420 Aethionema arabicum HOM05D009070 ORTHO05D010560 3.8e-31 138.7 95 66.3
THA.LOC104812801 Tarenaya hassleriana HOM05D009070 ORTHO05D010560 3.2e-30 135.6 97 56.7
C02p48100 Brassica napus HOM05D009070 ORTHO05D010560 2.1e-29 132.9 151 50.3
BraA02t08070Z Brassica rapa HOM05D009070 ORTHO05D010560 1.3e-28 130.2 148 48.6
A02p30520 Brassica napus HOM05D009070 ORTHO05D010560 2.3e-28 129.4 148 48.0
BolC2t10841H Brassica oleracea HOM05D009070 ORTHO05D010560 6.7e-28 127.9 144 48.6
BcaB08g35845 Brassica carinata HOM05D009070 ORTHO05D010560 5.3e-25 118.2 67 83.6
Actinidia02127 Actinidia chinensis HOM05D009070 ORTHO05D010560 5.0e-15 85.1 95 35.8
C03p42220 Brassica napus HOM05D009070 ORTHO05D010560 4.2e-14 82.0 86 48.8
Rhsim05G0054600 Rhododendron simsii HOM05D009070 ORTHO05D010560 2.7e-13 79.3 95 34.7
Dinv39135 Davidia involucrata HOM05D009070 ORTHO05D010560 5.7e-11 71.6 93 35.5
Sabra03G0046400 Salix brachista HOM05D009070 ORTHO05D010560 2.2e-10 69.7 95 35.8
Hma1.2p1_1786F.1_g302310 Hydrangea macrophylla HOM05D001099 ORTHO05D010560 6.3e-10 68.2 94 34.0
vmacro20795 Vaccinium macrocarpon HOM05D009070 ORTHO05D010560 6.3e-10 68.2 97 34.0
COL.COLO4_37190 Corchorus olitorius HOM05D007337 ORTHO05D010560 5.3e-09 65.1 86 32.6
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 9.1e-09 64.3 93 33.3
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 1.0e-07 60.8 94 28.7
Oeu038321.1 Olea europaea HOM05D001099 ORTHO05D000958 1.0e-07 60.8 99 31.3
Rhsim07G0020900 Rhododendron simsii HOM05D001099 ORTHO05D000958 1.0e-07 60.8 103 31.1
SEGI_13652 Sequoiadendron giganteum HOM05D001099 ORTHO05D000958 1.3e-07 60.5 90 31.1
Atru.chr9.1326 Acer truncatum HOM05D001099 ORTHO05D000958 1.7e-07 60.1 90 31.1
RcHm_v2.0_Chr7g0203041 Rosa chinensis HOM05D001099 ORTHO05D000958 1.7e-07 60.1 90 28.9
Nitab4.5_0007598g0030 Nicotiana tabacum HOM05D001099 ORTHO05D000958 2.2e-07 59.7 94 29.8
EL10Ac5g13076 Beta vulgaris HOM05D001099 ORTHO05D000958 2.9e-07 59.3 84 31.0
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 2.9e-07 59.3 100 35.0
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 2.9e-07 59.3 112 33.0
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 2.9e-07 59.3 112 33.0
Manes.14G036000 Manihot esculenta HOM05D001099 ORTHO05D000958 2.9e-07 59.3 101 29.7
PGR042G2034 Punica granatum HOM05D001099 ORTHO05D000958 2.9e-07 59.3 91 30.8
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 3.8e-07 58.9 100 35.0
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 6.5e-07 58.2 100 35.0
MELO3C013945.2 Cucumis melo HOM05D001099 ORTHO05D000958 8.5e-07 57.8 100 28.0
FAN04G1733 Fragaria x ananassa HOM05D001099 ORTHO05D000958 8.5e-07 57.8 89 29.2
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 1.1e-06 57.4 102 34.3
FAN08G3558 Fragaria x ananassa HOM05D001099 ORTHO05D000958 1.1e-06 57.4 89 29.2
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 1.4e-06 57.0 98 33.7
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.4e-06 57.0 102 33.3
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 1.4e-06 57.0 98 33.7
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 1.4e-06 57.0 98 33.7
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 1.4e-06 57.0 102 33.3
Dinv21628 Davidia involucrata HOM05D001099 ORTHO05D010560 1.4e-06 57.0 136 30.9
Dinv21632 Davidia involucrata HOM05D001099 ORTHO05D000958 1.4e-06 57.0 102 28.4
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.9e-06 56.6 108 34.3
MELO3C013946.2 Cucumis melo HOM05D001099 ORTHO05D000958 1.9e-06 56.6 100 28.0
FAN13G2298 Fragaria x ananassa HOM05D001099 ORTHO05D000958 1.9e-06 56.6 89 29.2
Prupe.5G071200 Prunus persica HOM05D001099 ORTHO05D000958 1.9e-06 56.6 90 26.7
Thecc.03G155700 Theobroma cacao HOM05D001099 ORTHO05D000958 1.9e-06 56.6 101 29.7
CsaV3_3G002770 Cucumis sativus L. HOM05D001099 ORTHO05D000958 2.5e-06 56.2 100 28.0
Medtr0004s0510 Medicago truncatula HOM05D001099 ORTHO05D000958 2.5e-06 56.2 90 30.0
Nitab4.5_0001318g0050 Nicotiana tabacum HOM05D001099 ORTHO05D000958 2.5e-06 56.2 95 34.7
Sed0013728 Sechium edule HOM05D001099 ORTHO05D000958 2.5e-06 56.2 100 28.0
AL1G23450 Arabidopsis lyrata HOM05D037278 ORTHO05D031405 3.2e-06 55.8 77 39.0
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 3.2e-06 55.8 102 33.3
AUR62007509 Chenopodium quinoa HOM05D001099 ORTHO05D000958 3.2e-06 55.8 84 28.6
AUR62039962 Chenopodium quinoa HOM05D001099 ORTHO05D000958 3.2e-06 55.8 84 28.6
ClCG10G002740 Citrullus lanatus HOM05D001099 ORTHO05D000958 4.2e-06 55.5 100 27.0
MBI05_g10091_MAGBIO Magnolia biondii HOM05D001099 ORTHO05D000958 4.2e-06 55.5 97 25.8
Nn6g33979 Nelumbo nucifera HOM05D001099 ORTHO05D000958 4.2e-06 55.5 102 27.5
PGR031G0040 Punica granatum HOM05D001099 ORTHO05D000958 4.2e-06 55.5 89 30.3
GSVIVG01018654001 Vitis vinifera HOM05D001099 ORTHO05D000958 4.2e-06 55.5 102 29.4
ClCG04G005380 Citrullus lanatus HOM05D001099 ORTHO05D000958 5.5e-06 55.1 100 27.0
CsaV3_3G002780 Cucumis sativus L. HOM05D001099 ORTHO05D000958 5.5e-06 55.1 100 28.0
FvH4_5g18720 Fragaria vesca HOM05D001099 ORTHO05D000958 5.5e-06 55.1 89 29.2
FAN18G3089 Fragaria x ananassa HOM05D001099 ORTHO05D000958 5.5e-06 55.1 89 29.2
Psat4g136720 Pisum sativum HOM05D001099 ORTHO05D000958 5.5e-06 55.1 97 28.9
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 7.2e-06 54.7 96 34.4
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 7.2e-06 54.7 100 33.0
Cpa.g.sc3.323 Carica papaya HOM05D001099 ORTHO05D000958 7.2e-06 54.7 101 26.7
Manes.06G134700 Manihot esculenta HOM05D001099 ORTHO05D000958 7.2e-06 54.7 102 29.4
TWI23G0452 Tripterygium wilfordii HOM05D001099 ORTHO05D000958 7.2e-06 54.7 102 27.5
GSVIVG01001315001 Vitis vinifera HOM05D001099 ORTHO05D000958 7.2e-06 54.7 101 30.7
arahy.Tifrunner.gnm1.ann1.PCT7KU Arachis hypogaea HOM05D001099 ORTHO05D000958 9.4e-06 54.3 101 26.7
arahy.Tifrunner.gnm1.ann1.TQI4QJ Arachis hypogaea HOM05D001099 ORTHO05D000958 9.4e-06 54.3 101 26.7
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 9.4e-06 54.3 100 34.0
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 9.4e-06 54.3 98 32.7
TWI81G0609 Tripterygium wilfordii HOM05D001099 ORTHO05D000958 9.4e-06 54.3 89 30.3


User provided reference genes

Program Settings