Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 6.5e-227 790.4 405 100.0
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 3.1e-221 771.5 410 96.8
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 1.7e-219 765.8 405 96.8
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 1.7e-219 765.8 405 96.8
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 4.6e-217 757.7 405 96.3
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 3.4e-204 714.9 405 89.6
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 8.5e-195 683.7 398 88.4
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 7.2e-194 680.6 387 87.9
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 6.1e-193 677.6 387 86.8
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 3.1e-189 665.2 385 86.0
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 4.4e-183 644.8 385 84.4
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 8.6e-179 630.6 388 83.0
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 8.0e-177 624.0 386 79.5
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 3.7e-174 615.1 388 81.2
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 7.0e-173 610.9 391 80.8
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 3.8e-171 605.1 387 79.1
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 2.8e-161 572.4 378 73.8
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 4.0e-160 568.5 385 71.7
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 5.2e-160 568.2 382 70.9
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 4.4e-159 565.1 387 71.6
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 5.8e-159 564.7 385 71.4
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 1.3e-158 563.5 385 71.4
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.7e-158 563.1 385 71.2
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 1.7e-158 563.1 384 70.1
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 2.9e-158 562.4 385 71.2
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 2.9e-158 562.4 385 71.2
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 3.7e-158 562.0 384 71.1
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 3.2e-157 558.9 385 69.4
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 4.1e-157 558.5 385 71.2
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 1.6e-156 556.6 385 70.4
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 1.6e-156 556.6 385 69.9
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 1.6e-156 556.6 380 71.6
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.6e-156 556.6 385 70.4
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.7e-156 555.8 385 71.9
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 6.0e-156 554.7 385 71.2
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 1.0e-155 553.9 378 71.4
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.3e-155 553.5 385 71.7
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 1.7e-155 553.1 385 70.4
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 3.0e-155 552.4 385 70.4
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 3.9e-155 552.0 385 71.7
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 5.0e-155 551.6 385 70.9
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 6.6e-155 551.2 385 70.6
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 1.5e-154 550.1 385 71.9
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 1.5e-154 550.1 385 71.9
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 1.9e-154 549.7 392 69.9
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 3.3e-154 548.9 387 70.5
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 1.2e-153 547.0 393 69.5
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 3.6e-153 545.4 393 70.0
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 4.7e-153 545.0 387 70.3
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 8.1e-153 544.3 385 70.1
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 2.3e-152 542.7 385 68.6
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 2.3e-152 542.7 381 69.3
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 2.3e-152 542.7 385 68.8
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 4.0e-152 542.0 381 69.6
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 5.2e-152 541.6 382 70.9
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 3.4e-151 538.9 385 67.8
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.7e-150 536.6 381 69.3
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 1.7e-150 536.6 385 68.8
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 2.2e-150 536.2 385 66.8
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 2.2e-150 536.2 385 68.8
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 3.7e-150 535.4 385 68.1
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 3.7e-150 535.4 386 67.6
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 1.1e-149 533.9 380 68.9
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 1.1e-149 533.9 383 67.6
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 1.1e-149 533.9 401 66.8
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 7.1e-149 531.2 385 66.5
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 4.6e-148 528.5 383 67.4
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 1.3e-147 526.9 380 68.2
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 3.0e-147 525.8 385 67.5
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 6.6e-147 524.6 381 67.2
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 1.5e-146 523.5 384 65.6
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 1.9e-146 523.1 385 65.7
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 3.3e-146 522.3 385 66.8
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 3.3e-146 522.3 385 64.9
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 4.7e-145 518.5 390 65.9
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 6.8e-144 514.6 385 66.8
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 8.9e-144 514.2 379 64.1
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 2.6e-143 512.7 386 65.5
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 3.8e-142 508.8 385 66.0
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 6.4e-142 508.1 385 67.0
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 6.4e-142 508.1 379 63.9
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 1.4e-141 506.9 383 62.4
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 3.2e-141 505.8 383 64.0
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 5.4e-141 505.0 379 62.5
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 3.5e-140 502.3 517 53.2
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.1e-138 497.3 383 65.3
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 2.5e-138 496.1 394 62.7
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 4.3e-138 495.4 346 70.2
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 8.1e-137 491.1 426 59.6
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 1.1e-136 490.7 383 65.0
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 9.0e-136 487.6 383 64.2
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 6.4e-134 481.5 385 65.2
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 7.1e-133 478.0 355 64.5
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 1.5e-130 470.3 385 61.6
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.8e-128 463.4 353 65.4
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 4.0e-128 462.2 309 71.8
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 2.0e-127 459.9 268 85.4
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 1.2e-124 450.7 311 72.7
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.2e-118 429.9 292 71.2
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 3.5e-116 422.5 390 54.4
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.3e-115 420.6 292 69.9
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 1.3e-113 414.1 381 54.6
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 8.2e-113 411.4 308 66.6
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 1.7e-110 403.7 390 54.9
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 9.3e-109 397.9 313 66.1
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 3.9e-107 392.5 264 70.5
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 3.9e-107 392.5 331 61.0
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 3.9e-107 392.5 401 50.6
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.9e-106 390.2 380 52.4
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 2.8e-105 386.3 381 52.0
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.9e-99 365.9 381 53.3
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.4e-96 357.5 232 74.1
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 9.4e-93 344.7 241 75.9
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 1.1e-85 321.2 270 61.1
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 8.2e-81 305.1 235 66.4
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 9.5e-61 238.4 432 37.0
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 8.0e-60 235.3 147 76.2
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 2.0e-58 230.7 395 37.5
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 1.4e-56 224.6 429 37.5
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 8.0e-52 208.8 154 70.1
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 5.6e-45 186.0 153 60.1
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 7.0e-40 169.1 128 65.6
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 5.8e-34 149.4 108 64.8
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 2.7e-31 140.6 184 42.9
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 1.1e-24 118.6 81 79.0
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.2e-20 105.1 64 75.0
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.8e-19 101.3 139 40.3
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 9.9e-18 95.5 150 38.0
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 1.7e-17 94.7 147 41.5
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-12 76.6 71 52.1
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 8.1e-12 75.9 111 36.0
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 9.0e-11 72.4 36 88.9
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 9.0e-11 72.4 71 53.5
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.0e-10 71.2 68 48.5
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 1.1e-08 65.5 36 80.6
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 3.2e-08 63.9 89 37.1


User provided reference genes

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