Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 3.6e-92 341.7 182 100.0
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 3.6e-92 341.7 182 100.0
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 3.7e-81 305.1 180 92.8
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 7.7e-79 297.4 180 90.6
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 1.0e-78 297.0 180 90.6
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 1.1e-69 266.9 181 82.9
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 1.7e-62 243.0 183 73.8
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 1.5e-53 213.4 176 66.5
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 4.3e-53 211.8 176 65.9
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 3.6e-52 208.8 188 61.7
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 1.0e-51 207.2 188 62.8
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 1.5e-50 203.4 185 65.9
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 2.6e-50 202.6 177 67.2
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 1.3e-49 200.3 184 63.0
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 3.2e-48 195.7 193 59.1
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 8.6e-46 187.6 176 61.9
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 1.1e-45 187.2 175 59.4
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 3.3e-45 185.7 177 62.1
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 3.3e-45 185.7 177 62.1
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 1.1e-40 170.6 187 52.9
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 1.1e-37 160.6 178 52.2
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 1.9e-32 143.3 182 46.2
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 1.5e-29 133.7 175 45.1
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 5.6e-29 131.7 180 42.8
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 9.6e-29 131.0 176 45.5
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 1.2e-28 130.6 177 42.4
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 1.6e-28 130.2 178 46.1
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 3.6e-28 129.0 176 44.3
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 3.6e-28 129.0 184 44.0
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 4.7e-28 128.6 174 45.4
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 1.1e-27 127.5 176 44.3
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 1.8e-27 126.7 176 43.8
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 4.0e-27 125.6 136 55.9
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 5.2e-27 125.2 176 40.9
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 1.5e-26 123.6 178 41.6
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 2.6e-26 122.9 176 46.6
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 4.4e-26 122.1 177 43.5
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 5.8e-26 121.7 175 41.7
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 9.9e-26 120.9 179 40.8
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 3.8e-25 119.0 178 43.8
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 3.8e-25 119.0 175 44.0
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 3.8e-25 119.0 182 42.9
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 1.9e-24 116.7 183 39.3
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 7.1e-24 114.8 179 40.2
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 9.3e-24 114.4 183 37.2
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 9.3e-24 114.4 174 38.5
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 1.2e-23 114.0 178 41.0
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 1.6e-23 113.6 183 41.5
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 1.6e-23 113.6 178 43.3
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 2.7e-23 112.8 176 40.9
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 3.5e-23 112.5 180 41.7
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 4.6e-23 112.1 179 39.1
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 6.0e-23 111.7 182 42.9
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 1.0e-22 110.9 177 41.2
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 1.0e-22 110.9 175 41.7
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 1.0e-22 110.9 180 38.3
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 1.7e-22 110.2 177 42.4
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 8.7e-22 107.8 176 38.1
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 1.5e-21 107.1 175 42.9
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.5e-21 107.1 179 36.9
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 1.9e-21 106.7 181 38.1
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 1.9e-21 106.7 178 39.3
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 1.9e-21 106.7 177 40.7
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 2.5e-21 106.3 182 39.0
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 2.5e-21 106.3 178 42.1
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 2.5e-21 106.3 180 41.7
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 4.3e-21 105.5 177 41.2
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 7.3e-21 104.8 182 38.5
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 7.3e-21 104.8 184 35.9
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 9.6e-21 104.4 183 40.4
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 1.3e-20 104.0 175 40.0
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.3e-20 104.0 183 39.9
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 1.6e-20 103.6 179 36.3
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 2.1e-20 103.2 179 36.3
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 2.1e-20 103.2 181 37.6
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 2.8e-20 102.8 175 38.9
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 3.6e-20 102.4 176 39.8
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 6.2e-20 101.7 180 38.3
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 6.2e-20 101.7 178 39.9
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 1.4e-19 100.5 183 39.9
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 3.1e-19 99.4 178 39.3
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 4.0e-19 99.0 178 39.3
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 1.2e-18 97.4 175 37.1
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 3.4e-18 95.9 176 38.6
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 3.4e-18 95.9 178 34.8
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 4.5e-18 95.5 167 36.5
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 5.8e-18 95.1 139 43.9
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 9.9e-18 94.4 187 38.0
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 1.3e-17 94.0 178 34.3
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 1.3e-17 94.0 174 35.1
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 1.3e-17 94.0 208 33.7
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 2.9e-17 92.8 179 38.5
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 3.8e-17 92.4 178 33.7
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 1.1e-16 90.9 182 37.4
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 1.9e-16 90.1 175 34.9
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 2.4e-16 89.7 185 34.6
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 7.1e-16 88.2 183 33.9
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 9.3e-16 87.8 177 33.9
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 1.6e-15 87.0 177 34.5
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 2.3e-14 83.2 175 33.1
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 3.0e-14 82.8 175 34.9
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 3.9e-14 82.4 213 34.3
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 2.5e-13 79.7 187 32.6
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 3.3e-13 79.3 177 29.9
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 1.6e-12 77.0 180 31.7
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 2.1e-12 76.6 186 32.3
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 3.6e-12 75.9 174 32.2
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 8.1e-12 74.7 175 32.0
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 1.1e-11 74.3 175 29.7
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 1.8e-11 73.6 174 32.2
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 3.1e-11 72.8 177 31.1
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 4.0e-11 72.4 175 32.0
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 1.2e-10 70.9 175 32.6
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 1.7e-09 67.0 161 29.2
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 1.7e-09 67.0 174 29.9
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 2.2e-09 66.6 179 30.2
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 1.9e-08 63.5 174 27.0
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 2.4e-08 63.2 177 29.4
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 2.4e-08 63.2 221 28.1
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 7.9e-07 58.2 57 52.6
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.0e-06 57.8 108 35.2
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 3.9e-06 55.8 171 28.7


User provided reference genes

Program Settings