Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 3590.8 1845 100.0
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 3577.7 1845 99.6
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 3395.5 1845 94.0
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 3395.5 1845 94.0
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 3395.5 1845 94.0
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 3369.3 1842 93.4
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 3224.5 1845 89.4
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 3097.4 1844 85.9
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 3042.3 1844 84.7
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 3024.6 1844 83.7
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 2865.9 1688 87.1
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 2800.4 1850 78.1
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 2466.0 1851 69.0
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1944.9 1866 55.3
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1944.5 1858 55.3
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1926.8 1858 55.4
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1921.4 1861 55.1
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1906.0 1860 54.7
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1897.1 1861 53.9
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1889.0 1857 54.2
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1874.4 1864 53.7
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1871.3 1857 54.3
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1871.3 1857 53.9
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1870.9 1859 54.1
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 1862.8 1861 53.9
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1855.9 1859 53.5
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1854.7 1856 53.5
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1834.7 1941 52.1
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1833.5 1859 52.8
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1785.8 1858 51.0
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1769.2 1860 51.1
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1753.8 1709 54.5
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1752.6 1861 51.7
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1746.5 1852 50.2
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1743.4 1858 50.3
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1743.0 2003 49.0
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1740.7 1865 51.2
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1739.2 1861 51.6
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1738.0 1859 50.4
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1737.2 1855 50.0
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1736.9 2044 48.3
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1725.7 1867 50.6
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1723.4 1856 49.5
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1722.2 1862 51.2
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1719.5 1872 49.6
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1708.3 1865 50.1
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1696.8 1862 49.7
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1691.8 1857 49.8
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1691.4 1989 48.0
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1691.4 1966 48.1
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1685.6 1888 48.1
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1681.8 1870 49.6
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1671.8 1861 48.8
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1661.0 1868 49.4
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1654.8 1861 49.3
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1649.0 1862 49.1
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1624.4 1862 47.5
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1623.2 1695 52.2
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1619.8 1865 48.4
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1614.0 1872 48.1
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1608.2 1875 47.6
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1594.7 1852 47.1
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1585.1 1724 49.2
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1583.2 1877 47.2
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1555.4 1879 46.4
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1541.2 1869 46.6
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1537.3 1521 53.5
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 0.0e+00 1523.5 933 84.4
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1521.9 1858 47.1
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1486.5 1858 46.7
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1485.3 1507 52.1
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1460.7 1964 43.5
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1446.0 1888 44.5
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1442.9 1447 52.2
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1439.5 1922 43.5
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1435.2 1655 48.2
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1424.5 1859 43.9
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1395.9 1865 43.2
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1355.9 1899 43.0
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1299.6 1881 41.6
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1261.1 1364 49.2
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1206.4 2064 37.5
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1200.7 1896 39.3
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1191.4 1351 47.8
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1157.1 1222 49.9
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1138.3 1305 48.7
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1133.6 1855 37.8
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1125.2 1365 46.7
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1093.6 1186 51.5
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1089.3 1867 37.8
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 6.9e-292 1008.4 970 56.0
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.8e-231 807.7 1034 43.8
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 1.5e-222 778.1 833 49.8
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 3.2e-220 770.4 723 57.3
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 2.0e-219 767.7 644 60.2
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 2.0e-214 751.1 1943 30.6
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 8.9e-199 699.1 936 45.3
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.1e-172 612.5 645 49.8
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 3.2e-172 610.9 845 43.4
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.2e-166 592.4 1150 34.9
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 1.2e-166 592.4 1839 27.6
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.5e-161 575.5 615 48.8
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.8e-152 544.7 827 39.7
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 8.2e-152 543.1 784 40.7
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.5e-150 538.9 589 50.8
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 3.9e-146 524.2 529 52.9
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 9.1e-143 513.1 640 43.0
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.6e-137 495.0 523 48.9
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 3.1e-119 434.9 418 54.3
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.0e-105 389.0 456 48.7
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 4.9e-104 384.4 632 37.0
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.1e-103 381.3 371 53.4
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.0e-101 375.2 341 56.6
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 6.6e-101 374.0 433 45.7
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 1.0e-98 366.7 349 56.4
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 2.3e-93 349.0 430 46.3
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.8e-91 342.0 439 41.0
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 7.8e-86 323.9 432 44.7
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.2e-80 305.8 352 44.9
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 6.4e-80 304.3 336 49.4
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 8.4e-80 303.9 401 46.6
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.9e-71 276.2 614 31.8
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 4.6e-70 271.6 442 36.7
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 7.6e-65 254.2 211 62.1
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 7.6e-65 254.2 546 33.2
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 5.4e-63 248.1 266 46.2
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 3.3e-60 238.8 183 68.3
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 4.8e-59 235.0 194 62.9
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 6.9e-58 231.1 334 38.0
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 9.9e-57 227.3 255 46.3
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 6.4e-56 224.6 274 43.8
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.3e-53 216.9 226 52.7
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 2.4e-50 206.1 948 24.9
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 8.7e-45 187.6 279 41.2
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.4e-42 180.3 201 45.3
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 7.6e-41 174.5 876 26.3
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.4e-39 170.2 205 47.3
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.5e-39 168.3 229 42.4
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.0e-37 164.1 266 40.2
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 5.1e-37 161.8 149 53.7
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 8.7e-37 161.0 132 56.1
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.5e-36 159.5 250 41.2
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 1.6e-35 156.8 142 54.2
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 6.3e-35 154.8 188 46.3
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 4.5e-33 148.7 151 53.0
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 7.7e-33 147.9 137 58.4
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.5e-31 141.7 131 57.3
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.0e-29 136.0 134 57.5
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.1e-28 134.0 174 43.1
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.1e-28 134.0 175 44.6
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 3.3e-28 132.5 155 44.5
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.2e-27 129.8 226 39.4
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 6.9e-26 124.8 137 52.6
C05p30190 Brassica napus HOM05D015522 ORTHO05D027244 1.3e-24 120.6 108 66.7
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 2.2e-24 119.8 122 46.7
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.2e-24 119.8 146 45.2
C05p30200 Brassica napus HOM05D015522 ORTHO05D027244 3.8e-24 119.0 106 67.0
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 5.5e-23 115.2 90 60.0
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 1.2e-22 114.0 165 44.8
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 2.7e-22 112.8 63 85.7
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.2e-19 103.2 74 62.2
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.0e-17 96.7 104 46.2
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 1.7e-16 93.6 101 48.5
BolC5t31758H Brassica oleracea HOM05D015522 ORTHO05D031943 1.7e-16 93.6 93 63.4
C09p45130 Brassica napus HOM05D015522 ORTHO05D031943 1.1e-15 90.9 117 51.3
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 4.2e-15 89.0 93 46.2
BcaC04g20309 Brassica carinata HOM05D015522 ORTHO05D031943 9.4e-15 87.8 93 60.2
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 7.5e-12 78.2 119 35.3
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.2e-11 76.6 110 40.0
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 4.8e-11 75.5 127 37.8
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 6.3e-11 75.1 52 67.3
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 4.1e-10 72.4 82 50.0
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 1.6e-09 70.5 121 34.7
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-08 67.4 49 59.2
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-08 67.4 49 59.2
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 2.5e-07 63.2 53 67.9


User provided reference genes

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