Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 1.7e-36 155.6 87 100.0
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 1.7e-36 155.6 87 100.0
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 3.1e-33 144.8 88 94.3
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 3.1e-33 144.8 88 94.3
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 3.1e-33 144.8 88 94.3
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 3.1e-33 144.8 88 94.3
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 1.2e-29 132.9 88 87.5
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 1.2e-29 132.9 88 87.5
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 4.6e-29 131.0 88 88.6
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 1.7e-28 129.0 87 83.9
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 2.1e-26 122.1 87 78.2
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 4.0e-25 117.9 88 81.8
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 8.9e-25 116.7 87 78.2
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 1.2e-24 116.3 88 80.7
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 1.2e-24 116.3 87 79.3
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 1.2e-24 116.3 88 80.7
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 2.0e-24 115.5 87 79.3
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 2.0e-24 115.5 87 79.3
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 4.4e-24 114.4 87 78.2
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 7.5e-24 113.6 87 77.0
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 1.7e-23 112.5 88 78.4
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.3e-20 102.8 84 70.2
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 3.1e-17 91.7 87 64.4
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 3.8e-15 84.7 57 75.4
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 6.4e-15 84.0 85 62.4
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 1.6e-10 69.3 52 69.2
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 4.8e-10 67.8 53 67.9
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 4.8e-10 67.8 52 69.2
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 8.1e-10 67.0 52 67.3
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 8.1e-10 67.0 52 67.3
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 8.1e-10 67.0 53 64.2
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.1e-09 66.6 52 65.4
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 1.1e-09 66.6 52 69.2
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 1.1e-09 66.6 52 65.4
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 1.4e-09 66.2 52 69.2
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 3.1e-09 65.1 50 70.0
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 5.3e-09 64.3 51 64.7
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 5.3e-09 64.3 48 70.8
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 4.4e-08 61.2 50 56.0
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 4.4e-08 61.2 52 61.5
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 7.6e-08 60.5 52 55.8
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 9.9e-08 60.1 52 61.5
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.3e-07 59.7 53 58.5
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 1.3e-07 59.7 52 57.7
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 1.7e-07 59.3 52 59.6
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 2.9e-07 58.5 51 60.8
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 4.9e-07 57.8 76 48.7
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 4.9e-07 57.8 52 57.7
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 8.4e-07 57.0 52 61.5
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 8.4e-07 57.0 52 61.5
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 1.1e-06 56.6 52 55.8
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 1.4e-06 56.2 50 54.0
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 1.4e-06 56.2 50 54.0
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 1.9e-06 55.8 52 55.8
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 3.2e-06 55.1 52 59.6
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 4.2e-06 54.7 52 51.9
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 5.4e-06 54.3 52 57.7
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 9.3e-06 53.5 44 56.8
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 9.3e-06 53.5 45 55.6


User provided reference genes

Program Settings