Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p40090 Brassica napus HOM05D005022 ORTHO05D002200 1.4e-75 286.2 144 100.0
C07p38070 Brassica napus HOM05D005022 ORTHO05D002200 4.0e-54 214.9 124 93.5
BraA06t26924Z Brassica rapa HOM05D005022 ORTHO05D002200 7.3e-48 194.1 95 100.0
BcaC06g33675 Brassica carinata HOM05D005022 ORTHO05D002200 2.1e-42 176.0 96 94.8
BolC7t44329H Brassica oleracea HOM05D005022 ORTHO05D002200 2.1e-42 176.0 96 94.8
BcaC06g30883 Brassica carinata HOM05D005022 ORTHO05D002200 1.3e-41 173.3 95 91.6
A02p36420 Brassica napus HOM05D005022 ORTHO05D002200 2.1e-39 166.0 97 87.6
BraA02t08639Z Brassica rapa HOM05D005022 ORTHO05D002200 2.1e-39 166.0 97 87.6
CARHR152330 Cardamine hirsuta HOM05D005022 ORTHO05D002200 2.8e-39 165.6 97 86.6
AL5G19080 Arabidopsis lyrata HOM05D005022 ORTHO05D002200 4.7e-39 164.9 96 86.5
BcaC03g17565 Brassica carinata HOM05D005022 ORTHO05D002200 6.2e-39 164.5 95 85.3
C02p55350 Brassica napus HOM05D005022 ORTHO05D002200 6.2e-39 164.5 95 85.3
BolC2t11592H Brassica oleracea HOM05D005022 ORTHO05D002200 6.2e-39 164.5 95 85.3
Thhalv10005146m.g Eutrema salsugineum HOM05D005022 ORTHO05D002200 8.1e-39 164.1 95 85.3
BcaB07g30093 Brassica carinata HOM05D005022 ORTHO05D002200 1.1e-38 163.7 95 84.2
Sp2g17780 Schrenkiella parvula HOM05D005022 ORTHO05D002200 1.8e-38 162.9 95 84.2
Carub.0005s0790 Capsella rubella HOM05D005022 ORTHO05D002200 1.2e-37 160.2 97 85.6
AT3G29170 Arabidopsis thaliana HOM05D005022 ORTHO05D002200 2.0e-37 159.5 96 84.4
THA.LOC104823026 Tarenaya hassleriana HOM05D005022 ORTHO05D002200 1.4e-35 153.3 95 78.9
THA.LOC104823702 Tarenaya hassleriana HOM05D005022 ORTHO05D002200 6.0e-34 147.9 95 78.9
Cpa.g.sc14.131 Carica papaya HOM05D005022 ORTHO05D002200 7.6e-29 131.0 95 67.4
Migut.K01301 Erythranthe guttata HOM05D005022 ORTHO05D002200 9.9e-29 130.6 95 68.4
vmacro16388 Vaccinium macrocarpon HOM05D005022 ORTHO05D002200 1.7e-28 129.8 95 64.2
MSTRG.3339 Avicennia marina HOM05D005022 ORTHO05D002200 3.8e-28 128.6 95 65.3
COL.COLO4_12232 Corchorus olitorius HOM05D005022 ORTHO05D002200 3.8e-28 128.6 96 66.7
MSTRG.15466 Avicennia marina HOM05D005022 ORTHO05D002200 4.9e-28 128.3 95 64.2
Gohir.D11G074700 Gossypium hirsutum HOM05D005022 ORTHO05D002200 4.9e-28 128.3 95 69.5
Gohir.A11G070800 Gossypium hirsutum HOM05D005022 ORTHO05D002200 8.4e-28 127.5 95 69.5
unitig_748.g7266 Utricularia gibba HOM05D005022 ORTHO05D002200 8.4e-28 127.5 95 68.4
Rhsim10G0035600 Rhododendron simsii HOM05D005022 ORTHO05D002200 1.4e-27 126.7 95 64.2
Cc05_g15190 Coffea canephora HOM05D005022 ORTHO05D002200 1.9e-27 126.3 95 65.3
Duzib147G1375 Durio zibethinus HOM05D005022 ORTHO05D002200 3.2e-27 125.6 95 67.4
GSVIVG01011468001 Vitis vinifera HOM05D005022 ORTHO05D002200 5.4e-27 124.8 95 65.3
Rhsim07G0089800 Rhododendron simsii HOM05D005022 ORTHO05D002200 9.2e-27 124.0 95 63.2
QL02p084958 Quercus lobata HOM05D005022 ORTHO05D002200 1.2e-26 123.6 95 63.2
Thecc.04G088000 Theobroma cacao HOM05D005022 ORTHO05D002200 1.6e-26 123.2 95 65.3
Oeu023719.1 Olea europaea HOM05D005022 ORTHO05D002200 2.1e-26 122.9 95 64.2
Eucgr.I02005 Eucalyptus grandis HOM05D005022 ORTHO05D002200 2.7e-26 122.5 96 66.7
Sed0016737 Sechium edule HOM05D005022 ORTHO05D002200 2.7e-26 122.5 95 64.2
CSS0002409 Camellia sinensis var. sinensis HOM05D005022 ORTHO05D002200 3.5e-26 122.1 96 65.6
Haze_14492 Corylus avellana HOM05D005022 ORTHO05D002200 3.5e-26 122.1 95 64.2
Gorai.007G080300 Gossypium raimondii HOM05D005022 ORTHO05D002200 3.5e-26 122.1 91 69.2
CAN.G623.29 Capsicum annuum HOM05D005022 ORTHO05D002200 4.6e-26 121.7 95 64.2
Potri.006G053300 Populus trichocarpa HOM05D005022 ORTHO05D002200 4.6e-26 121.7 95 64.2
Solyc07g065740.3 Solanum lycopersicum HOM05D005022 ORTHO05D002200 4.6e-26 121.7 95 65.3
Sopen07g033950 Solanum pennellii HOM05D005022 ORTHO05D002200 4.6e-26 121.7 95 65.3
MELO3C022011.2 Cucumis melo HOM05D005022 ORTHO05D002200 6.0e-26 121.3 95 63.2
Dinv41801 Davidia involucrata HOM05D005022 ORTHO05D002200 6.0e-26 121.3 95 63.2
Sabra06G0037700 Salix brachista HOM05D005022 ORTHO05D002200 6.0e-26 121.3 95 62.1
PGSC0003DMG400022162 Solanum tuberosum HOM05D005022 ORTHO05D002200 6.0e-26 121.3 95 64.2
Ciclev10013833m.g Citrus clementina HOM05D005022 ORTHO05D002200 7.8e-26 120.9 95 63.2
Hma1.2p1_0325F.1_g125800 Hydrangea macrophylla HOM05D005022 ORTHO05D002200 7.8e-26 120.9 95 64.2
Hund09378 Selenicereus undatus HOM05D005022 ORTHO05D002200 7.8e-26 120.9 99 67.7
ClCG09G017950 Citrullus lanatus HOM05D005022 ORTHO05D002200 1.0e-25 120.6 95 63.2
TAR629G0139 Trochodendron aralioides HOM05D005022 ORTHO05D002200 1.0e-25 120.6 96 65.6
Cc07_g03690 Coffea canephora HOM05D005022 ORTHO05D002200 2.3e-25 119.4 95 66.3
CsaV3_5G038280 Cucumis sativus L. HOM05D005022 ORTHO05D002200 2.3e-25 119.4 95 63.2
Lsat_1_v5_gn_2_89360 Lactuca sativa HOM05D005022 ORTHO05D002200 2.3e-25 119.4 95 64.2
RcHm_v2.0_Chr2g0167041 Rosa chinensis HOM05D005022 ORTHO05D002200 2.3e-25 119.4 95 65.3
SGA_v2.0_scaffold1515G53975 Striga asiatica HOM05D005022 ORTHO05D002200 2.3e-25 119.4 95 61.1
Aa31LG2G4070 Aethionema arabicum HOM05D005022 ORTHO05D002200 3.0e-25 119.0 95 68.4
TWI60G0052 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 3.9e-25 118.6 95 62.1
ECA238G3567 Erigeron canadensis HOM05D005022 ORTHO05D002200 5.1e-25 118.2 95 62.1
Lj6g0010384 Lotus japonicus HOM05D005022 ORTHO05D002200 5.1e-25 118.2 95 66.3
Glyma.15G086500 Glycine max HOM05D005022 ORTHO05D002200 8.7e-25 117.5 95 65.3
Lalb_Chr01g0010761 Lupinus albus HOM05D005022 ORTHO05D002200 8.7e-25 117.5 95 64.2
Medtr2g017920 Medicago truncatula HOM05D005022 ORTHO05D002200 8.7e-25 117.5 95 65.3
Nitab4.5_0004583g0030 Nicotiana tabacum HOM05D005022 ORTHO05D002200 8.7e-25 117.5 96 65.6
Nitab4.5_0013922g0020 Nicotiana tabacum HOM05D005022 ORTHO05D002200 8.7e-25 117.5 96 65.6
arahy.Tifrunner.gnm1.ann1.72TST8 Arachis hypogaea HOM05D005022 ORTHO05D002200 1.1e-24 117.1 95 62.1
arahy.Tifrunner.gnm1.ann1.I9NK4S Arachis hypogaea HOM05D005022 ORTHO05D002200 1.1e-24 117.1 95 62.1
Manes.14G112300 Manihot esculenta HOM05D005022 ORTHO05D002200 1.5e-24 116.7 95 62.1
CANSAT64G2922 Cannabis sativa HOM05D005022 ORTHO05D002200 1.9e-24 116.3 95 65.3
CiPaw.03G021600 Carya illinoinensis HOM05D005022 ORTHO05D002200 2.5e-24 115.9 95 62.1
AUR62026682 Chenopodium quinoa HOM05D005022 ORTHO05D002200 3.3e-24 115.5 98 61.2
AUR62040591 Chenopodium quinoa HOM05D005022 ORTHO05D002200 3.3e-24 115.5 98 61.2
Ca_00478_v3 Cicer arietinum L. HOM05D005022 ORTHO05D002200 3.3e-24 115.5 95 64.2
Lalb_Chr15g0086431 Lupinus albus HOM05D005022 ORTHO05D002200 3.3e-24 115.5 95 64.2
Glyma.13G225600 Glycine max HOM05D005022 ORTHO05D002200 4.3e-24 115.2 91 64.8
Sed0010256 Sechium edule HOM05D005022 ORTHO05D002200 4.3e-24 115.2 95 62.1
Sc11g0004910 Simmondsia chinensis HOM05D005022 ORTHO05D002200 4.3e-24 115.2 98 60.2
SGA_v2.0_scaffold236G43759 Striga asiatica HOM05D005022 ORTHO05D002200 4.3e-24 115.2 95 58.9
HPP92_007847 Vanilla planifolia HOM05D005022 ORTHO05D002200 4.3e-24 115.2 95 64.2
Ah.02g113030 Amaranthus hybridus HOM05D005022 ORTHO05D002200 5.6e-24 114.8 99 59.6
Peaxi162Scf00139g00112 Petunia axillaris HOM05D000001 ORTHO05D000003 5.6e-24 114.8 95 64.2
EL10Ac5g10898 Beta vulgaris HOM05D005022 ORTHO05D002200 7.3e-24 114.4 99 59.6
Phvul.006G171600 Phaseolus vulgaris HOM05D005022 ORTHO05D002200 9.6e-24 114.0 95 64.2
TWI34G0511 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 9.6e-24 114.0 95 60.0
TWI34G1044 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 9.6e-24 114.0 95 60.0
VMungo0540G0520 Vigna mungo HOM05D005022 ORTHO05D002200 9.6e-24 114.0 95 65.3
MD09G1056300 Malus domestica HOM05D005022 ORTHO05D002200 1.2e-23 113.6 95 62.1
Hund02686 Selenicereus undatus HOM05D005022 ORTHO05D002200 1.2e-23 113.6 95 62.1
Zm00001eb020420 Zea mays HOM05D005022 ORTHO05D002200 1.2e-23 113.6 97 59.8
CiPaw.03G278100 Carya illinoinensis HOM05D005022 ORTHO05D002200 1.6e-23 113.2 95 61.1
FvH4_6g47840 Fragaria vesca HOM05D005022 ORTHO05D002200 1.6e-23 113.2 95 62.1
FAN05G3245 Fragaria x ananassa HOM05D005022 ORTHO05D002200 1.6e-23 113.2 95 62.1
FAN14G5329 Fragaria x ananassa HOM05D005022 ORTHO05D002200 1.6e-23 113.2 95 62.1
PGR004G0139 Punica granatum HOM05D005022 ORTHO05D002200 1.6e-23 113.2 96 62.5
AUR62021768 Chenopodium quinoa HOM05D005022 ORTHO05D002200 2.1e-23 112.8 98 60.2
MD17G1053800 Malus domestica HOM05D005022 ORTHO05D002200 2.1e-23 112.8 95 62.1
TPR.G4494 Trifolium pratense HOM05D005022 ORTHO05D002200 2.1e-23 112.8 95 63.2
Lj2g0004380 Lotus japonicus HOM05D005022 ORTHO05D002200 2.8e-23 112.5 95 64.2
Lj3g0011454 Lotus japonicus HOM05D005022 ORTHO05D002200 2.8e-23 112.5 95 64.2
PSO063G1170 Papaver somniferum HOM05D005022 ORTHO05D002200 2.8e-23 112.5 95 61.1
PSO063G2328 Papaver somniferum HOM05D005022 ORTHO05D002200 2.8e-23 112.5 95 61.1
Psat1g194000 Pisum sativum HOM05D005022 ORTHO05D002200 2.8e-23 112.5 115 55.7
FAN09G0227 Fragaria x ananassa HOM05D005022 ORTHO05D002200 4.7e-23 111.7 95 61.1
Atru.chr3.2861 Acer truncatum HOM05D005022 ORTHO05D002200 6.2e-23 111.3 120 55.8
Prupe.3G262800 Prunus persica HOM05D005022 ORTHO05D002200 6.2e-23 111.3 95 62.1
PGR056G0006 Punica granatum HOM05D005022 ORTHO05D002200 6.2e-23 111.3 96 61.5
Manes.08G085000 Manihot esculenta HOM05D005022 ORTHO05D002200 8.1e-23 110.9 97 61.9
Phvul.002G129000 Phaseolus vulgaris HOM05D005022 ORTHO05D002200 8.1e-23 110.9 95 64.2
Lj3g0009973 Lotus japonicus HOM05D005022 ORTHO05D002200 1.1e-22 110.5 95 63.2
Actinidia26238 Actinidia chinensis HOM05D005022 ORTHO05D002200 1.4e-22 110.2 95 56.8
Manes.06G037100 Manihot esculenta HOM05D005022 ORTHO05D002200 3.1e-22 109.0 97 60.8
Os12g0129000 Oryza sativa ssp. japonica HOM05D005022 ORTHO05D002200 3.1e-22 109.0 96 61.5
AUR62008331 Chenopodium quinoa HOM05D005022 ORTHO05D002200 4.0e-22 108.6 98 58.2
Atru.chr8.334 Acer truncatum HOM05D005022 ORTHO05D002200 9.0e-22 107.5 119 52.9
HanXRQChr17g0546151 Helianthus annuus HOM05D005022 ORTHO05D002200 9.0e-22 107.5 95 56.8
Lsat_1_v5_gn_3_99860 Lactuca sativa HOM05D005022 ORTHO05D002200 9.0e-22 107.5 95 55.8
Aqoxy5G02989 Aquilegia oxysepala HOM05D005022 ORTHO05D002200 2.6e-21 105.9 96 60.4
DCAR_011073 Daucus carota HOM05D005022 ORTHO05D002200 2.2e-20 102.8 95 55.8
DCAR_026919 Daucus carota HOM05D005022 ORTHO05D002200 1.1e-19 100.5 95 55.8
CDE02G1391 Ceratophyllum demersum HOM05D005022 ORTHO05D002200 1.4e-19 100.1 95 53.7
CANSAT78G1165 Cannabis sativa HOM05D005022 ORTHO05D002200 2.4e-19 99.4 93 57.0
HanXRQChr15g0473111 Helianthus annuus HOM05D005022 ORTHO05D002200 1.2e-18 97.1 95 52.6
Sed0009283 Sechium edule HOM05D005022 ORTHO05D002200 3.5e-18 95.5 88 56.8
CSS0006095 Camellia sinensis var. sinensis HOM05D005022 ORTHO05D002200 1.9e-16 89.7 96 54.2
CAN.G27.34 Capsicum annuum HOM05D005022 ORTHO05D011077 1.4e-14 83.6 72 56.9
CBR_g61519 Chara braunii HOM05D005022 ORTHO05D002200 1.8e-14 83.2 99 50.5
Mapoly0001s0441 Marchantia polymorpha HOM05D005022 ORTHO05D002200 2.6e-13 79.3 102 50.0
SEGI_21990 Sequoiadendron giganteum HOM05D005022 ORTHO05D002200 2.6e-13 79.3 112 43.8
Potri.016G054301 Populus trichocarpa HOM05D005022 ORTHO05D002200 9.9e-13 77.4 75 56.0
Mapoly0059s0090 Marchantia polymorpha HOM05D005022 ORTHO05D002200 1.1e-11 73.9 95 46.3
Pp3c7_15070 Physcomitrium patens HOM05D005022 ORTHO05D002200 1.4e-11 73.6 102 43.1
Pp3c11_17600 Physcomitrium patens HOM05D005022 ORTHO05D002200 7.1e-11 71.2 98 42.9
Pp3c18_10200 Physcomitrium patens HOM05D005022 ORTHO05D002200 7.9e-10 67.8 99 41.4
SMO340G0185 Selaginella moellendorffii HOM05D005022 ORTHO05D002200 7.9e-10 67.8 100 40.0
Nn4g23286 Nelumbo nucifera HOM05D005022 ORTHO05D002200 1.5e-08 63.5 60 60.0


User provided reference genes

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