Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 1.9e-107 392.5 192 100.0
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 9.0e-94 347.1 169 100.0
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 4.9e-92 341.3 182 90.7
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 9.0e-86 320.5 167 91.6
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 9.9e-85 317.0 177 88.7
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 1.3e-84 316.6 165 92.1
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 1.3e-84 316.6 195 81.0
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 2.9e-84 315.5 165 92.1
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 6.4e-84 314.3 167 91.0
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 8.4e-84 313.9 162 94.4
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 1.1e-83 313.5 177 87.0
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 1.1e-83 313.5 163 91.4
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 1.1e-83 313.5 163 91.4
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 1.9e-83 312.8 161 91.9
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 2.4e-83 312.4 165 91.5
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 6.0e-82 307.8 166 91.0
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 5.1e-73 278.1 162 80.2
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 1.1e-72 276.9 154 83.1
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 1.5e-72 276.6 163 79.8
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 3.7e-71 271.9 157 80.9
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 8.2e-71 270.8 164 78.7
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 1.8e-70 269.6 156 79.5
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 2.4e-70 269.2 156 77.6
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 4.0e-70 268.5 160 78.1
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 4.0e-70 268.5 162 75.9
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 1.5e-69 266.5 162 76.5
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 2.0e-69 266.2 166 76.5
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 5.8e-69 264.6 162 77.2
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 5.8e-69 264.6 166 75.9
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 1.7e-68 263.1 161 74.5
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 2.2e-68 262.7 161 74.5
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 2.9e-68 262.3 166 74.1
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 3.8e-68 261.9 167 74.3
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 4.9e-68 261.5 166 75.3
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 1.1e-67 260.4 167 74.9
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 1.9e-67 259.6 157 77.1
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 1.9e-67 259.6 151 80.8
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 1.9e-67 259.6 156 78.2
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 2.5e-67 259.2 168 73.8
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 4.2e-67 258.5 157 76.4
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 7.1e-67 257.7 162 72.8
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 7.1e-67 257.7 161 75.2
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 9.3e-67 257.3 161 75.2
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 1.6e-66 256.5 161 73.9
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 3.5e-66 255.4 163 74.8
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 3.5e-66 255.4 163 74.8
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 4.6e-66 255.0 173 70.5
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 7.9e-66 254.2 157 76.4
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 1.8e-65 253.1 151 75.5
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 2.3e-65 252.7 151 75.5
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 3.0e-65 252.3 156 74.4
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 3.9e-65 251.9 163 73.0
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 3.9e-65 251.9 167 68.9
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 5.1e-65 251.5 163 73.6
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 6.7e-65 251.1 159 73.6
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 1.1e-64 250.4 157 76.4
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 1.1e-64 250.4 171 72.5
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 1.1e-64 250.4 157 74.5
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 1.9e-64 249.6 162 71.0
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 2.5e-64 249.2 165 71.5
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 2.5e-64 249.2 176 67.6
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 2.5e-64 249.2 161 73.3
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 3.3e-64 248.8 137 82.5
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 3.3e-64 248.8 151 74.8
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 5.7e-64 248.1 151 73.5
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 5.7e-64 248.1 166 71.1
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 9.7e-64 247.3 141 78.7
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 9.7e-64 247.3 163 72.4
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 1.3e-63 246.9 155 73.5
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 1.6e-63 246.5 163 68.1
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 2.2e-63 246.1 161 71.4
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 2.8e-63 245.7 166 68.1
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 8.2e-63 244.2 156 71.2
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 2.4e-62 242.7 180 65.0
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 2.4e-62 242.7 192 63.5
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 6.9e-62 241.1 153 73.9
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 6.9e-62 241.1 157 70.1
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 1.2e-61 240.4 162 68.5
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 1.5e-61 240.0 153 74.5
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 4.5e-61 238.4 156 66.0
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 7.6e-61 237.7 153 73.2
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.0e-60 237.3 158 72.2
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 1.0e-60 237.3 166 69.9
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.7e-60 236.5 153 71.9
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 2.2e-60 236.1 151 69.5
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 2.2e-60 236.1 150 70.7
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 1.6e-58 229.9 131 87.0
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 3.1e-54 215.7 180 63.3
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 5.3e-54 214.9 161 67.7
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 1.0e-52 210.7 124 75.0
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 5.5e-51 204.9 154 60.4
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 1.4e-49 200.3 123 74.0
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 5.1e-49 198.4 102 94.1
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 2.0e-48 196.4 165 58.8
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 2.0e-48 196.4 170 60.6
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 3.3e-48 195.7 125 70.4
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 7.4e-48 194.5 146 60.3
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 2.2e-47 193.0 119 72.3
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 1.7e-44 183.3 161 54.0
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 5.5e-43 178.3 151 60.3
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 6.5e-36 154.8 156 52.6
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 3.2e-35 152.5 118 68.6
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 1.8e-33 146.7 87 75.9
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-33 146.0 92 69.6
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 8.8e-33 144.4 96 77.1
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 5.3e-30 135.2 77 76.6
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 7.7e-21 104.8 71 70.4
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 3.5e-13 79.3 50 74.0
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 6.1e-10 68.6 45 73.3
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 2.6e-08 63.2 43 67.4
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 3.4e-08 62.8 36 75.0
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 4.4e-08 62.4 40 72.5
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 1.7e-07 60.5 77 44.2
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 3.7e-07 59.3 39 66.7
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 8.3e-07 58.2 47 57.4


User provided reference genes

Program Settings