Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 1.3e-238 829.3 434 100.0
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 1.3e-238 829.3 434 100.0
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 1.5e-141 506.9 538 61.2
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 2.5e-128 463.0 485 62.9
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 7.4e-112 408.3 496 56.9
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 1.6e-111 407.1 499 56.5
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 8.2e-111 404.8 477 56.8
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 1.0e-108 397.9 484 55.6
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 1.0e-108 397.9 484 55.6
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 6.1e-106 388.7 486 58.2
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 1.4e-105 387.5 292 74.3
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 2.3e-105 386.7 571 50.4
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 4.8e-103 379.0 554 49.3
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 1.9e-99 367.1 543 48.4
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 2.2e-95 353.6 336 64.3
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 6.5e-92 342.0 559 47.0
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 8.0e-90 335.1 536 46.5
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 4.7e-82 309.3 541 46.2
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 4.8e-79 299.3 538 46.1
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 2.0e-72 277.3 541 43.3
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 7.0e-70 268.9 527 43.3
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 2.6e-64 250.4 485 44.9
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 2.6e-64 250.4 485 44.9
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 1.2e-61 241.5 495 41.6
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 6.8e-57 225.7 485 41.2
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 1.7e-44 184.5 483 37.1
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 5.1e-44 183.0 460 35.9
BcaC06g30873 Brassica carinata HOM05D005710 ORTHO05D004657 9.9e-40 168.7 138 72.5
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 2.9e-39 167.2 459 34.6
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 1.9e-38 164.5 440 35.0
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 7.1e-38 162.5 447 35.6
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 1.2e-37 161.8 453 35.8
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 4.6e-37 159.8 387 37.2
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 1.3e-36 158.3 365 36.4
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 1.7e-36 157.9 331 38.4
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 5.1e-36 156.4 436 36.5
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 1.5e-35 154.8 425 34.6
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 1.9e-35 154.5 388 36.6
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 9.6e-35 152.1 399 35.8
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 8.1e-34 149.1 415 34.5
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 1.8e-33 147.9 418 35.2
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 1.2e-32 145.2 429 34.7
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 1.5e-32 144.8 426 34.5
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 4.4e-32 143.3 417 35.5
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 4.4e-32 143.3 376 36.7
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 5.8e-32 142.9 384 36.5
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.3e-31 141.7 363 37.5
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.4e-30 138.3 340 36.8
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 7.1e-30 136.0 342 35.7
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 9.3e-30 135.6 401 33.4
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.2e-29 135.2 383 35.8
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 2.7e-29 134.0 317 36.0
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 2.7e-29 134.0 349 34.7
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 1.0e-28 132.1 359 35.4
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.7e-28 131.3 406 33.3
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 3.0e-28 130.6 358 36.9
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 3.0e-28 130.6 370 34.3
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 6.6e-28 129.4 406 31.5
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 1.1e-27 128.6 338 36.1
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.1e-27 128.6 350 36.6
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 4.3e-27 126.7 366 35.8
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 4.3e-27 126.7 365 33.4
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 7.3e-27 125.9 375 33.1
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 2.1e-26 124.4 366 34.2
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 2.1e-26 124.4 372 34.9
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 6.2e-26 122.9 317 38.5
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 6.2e-26 122.9 364 34.1
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 6.2e-26 122.9 407 34.2
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 1.1e-25 122.1 347 35.4
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 5.3e-25 119.8 397 32.2
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 5.3e-25 119.8 378 32.8
BolC7t44342H Brassica oleracea HOM05D005710 ORTHO05D004657 6.9e-25 119.4 86 76.7
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 1.2e-24 118.6 387 33.9
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 1.5e-24 118.2 207 39.1
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 2.0e-24 117.9 356 33.1
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 4.4e-24 116.7 395 32.2
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 4.4e-24 116.7 442 31.0
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 1.3e-23 115.2 372 32.0
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 1.7e-23 114.8 388 32.5
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 2.9e-23 114.0 401 31.4
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 3.8e-23 113.6 188 41.0
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 4.9e-23 113.2 329 35.9
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 4.9e-23 113.2 417 30.9
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 6.4e-23 112.8 427 31.6
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 1.1e-22 112.1 467 30.4
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 1.4e-22 111.7 386 31.3
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 1.9e-22 111.3 393 34.1
Sp7g02650 Schrenkiella parvula HOM05D005710 ORTHO05D004657 1.9e-22 111.3 296 37.5
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 2.4e-22 110.9 295 33.2
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 3.2e-22 110.5 339 34.2
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 4.2e-22 110.2 388 30.7
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 5.4e-22 109.8 359 32.9
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 1.2e-21 108.6 355 30.4
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 1.2e-21 108.6 427 29.0
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 6.0e-21 106.3 459 30.1
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 7.9e-21 105.9 326 30.7
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 1.0e-20 105.5 374 33.2
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 1.3e-20 105.1 187 38.0
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 1.7e-20 104.8 154 45.5
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 1.7e-20 104.8 453 29.8
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 3.9e-20 103.6 468 28.8
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 1.9e-19 101.3 362 29.8
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 4.3e-19 100.1 356 32.3
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 1.3e-18 98.6 397 30.7
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 8.1e-18 95.9 382 30.6
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 6.9e-17 92.8 428 29.2
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 9.0e-17 92.4 153 41.2
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 1.5e-16 91.7 368 28.0
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 7.6e-16 89.4 157 38.2
A07p19920 Brassica napus HOM05D005710 ORTHO05D004657 1.7e-15 88.2 180 46.1
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.7e-15 88.2 103 49.5
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 8.4e-15 85.9 370 28.9
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 7.1e-14 82.8 110 44.5
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 1.2e-13 82.0 246 31.3
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 4.6e-13 80.1 173 36.4
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 6.0e-13 79.7 325 28.6
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 3.9e-12 77.0 130 40.8
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 2.4e-09 67.8 304 30.9
AL3G48400 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 6.9e-09 66.2 50 64.0
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 2.5e-06 57.8 143 32.9
Pp3c19_17670 Physcomitrium patens HOM05D006269 ORTHO05D001487 4.2e-06 57.0 105 35.2


User provided reference genes

Program Settings