Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1487.2 780 100.0
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1487.2 780 100.0
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1428.7 784 96.0
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1426.4 784 95.9
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1426.4 784 95.9
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1416.7 783 95.4
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1367.8 791 90.8
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1360.5 790 90.6
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1313.5 794 86.6
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1244.6 782 84.5
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1234.6 780 83.8
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1220.3 780 83.3
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1196.0 781 81.7
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1194.9 786 80.7
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1190.3 786 80.4
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1189.9 787 80.4
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1182.9 782 80.3
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1148.7 792 78.0
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1147.5 782 79.8
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1111.7 787 74.2
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1110.9 793 73.6
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1105.9 789 74.0
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1100.9 785 74.0
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1090.9 785 72.4
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1087.4 804 71.6
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1085.9 786 71.9
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1083.9 784 72.7
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1083.6 755 75.8
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1077.0 766 73.1
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 792 72.7
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1076.2 777 72.7
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1075.5 787 72.6
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 5.3e-312 1073.9 786 72.5
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.1e-311 1073.2 785 73.5
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 2.7e-311 1071.6 790 72.8
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 6.4e-311 1070.5 802 71.7
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 4.1e-310 1067.8 797 71.3
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 1.2e-309 1066.2 788 72.8
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 1.2e-309 1066.2 782 72.5
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.5e-309 1065.8 782 72.4
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 2.6e-309 1065.1 782 72.6
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 3.4e-309 1064.7 800 70.6
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 3.4e-309 1064.7 788 72.1
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 3.4e-309 1064.7 784 73.0
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.7e-308 1062.4 792 71.7
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 3.8e-308 1061.2 777 72.7
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 9.3e-307 1056.6 857 68.4
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 1.6e-306 1055.8 782 72.0
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.1e-306 1055.4 777 72.2
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 7.9e-306 1053.5 787 71.5
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 1.8e-305 1052.4 777 71.8
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 2.3e-305 1052.0 832 68.3
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 1.1e-304 1049.7 780 70.9
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 1.5e-304 1049.3 791 70.8
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.9e-304 1048.9 791 71.2
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 2.5e-304 1048.5 782 70.8
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 3.7e-303 1044.6 790 70.3
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 4.8e-303 1044.3 785 71.2
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 8.2e-303 1043.5 788 70.1
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.0e-302 1041.2 794 70.0
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 6.9e-302 1040.4 795 69.8
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 6.9e-302 1040.4 776 71.4
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 4.5e-301 1037.7 778 71.1
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.7e-300 1035.8 792 70.1
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 7.1e-299 1030.4 793 69.6
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 7.9e-298 1026.9 834 67.1
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 1.3e-297 1026.2 777 69.8
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.3e-297 1025.4 791 69.8
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 3.9e-297 1024.6 781 68.5
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 9.0e-294 1013.4 778 68.3
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 2.6e-293 1011.9 782 69.1
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 6.5e-292 1007.3 812 67.0
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.1e-291 1006.5 791 68.8
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 3.2e-291 1005.0 773 68.3
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 3.2e-291 1005.0 773 68.2
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 7.2e-291 1003.8 791 67.9
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-290 1002.3 646 83.6
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 3.3e-288 995.0 783 68.1
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 2.2e-287 992.3 661 77.8
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 2.8e-287 991.9 794 67.6
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 2.8e-287 991.9 781 66.2
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 4.1e-286 988.0 787 67.1
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 2.0e-285 985.7 775 68.3
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 4.5e-285 984.6 781 67.7
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 4.5e-285 984.6 761 69.5
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 5.9e-285 984.2 802 66.7
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 5.9e-285 984.2 794 65.7
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 5.0e-284 981.1 780 65.5
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 6.5e-284 980.7 793 65.3
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 4.2e-283 978.0 885 62.5
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.6e-282 976.1 787 65.9
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 2.8e-279 965.3 781 65.9
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 3.4e-277 958.4 780 64.5
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 7.7e-277 957.2 787 65.3
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 2.9e-276 955.3 777 67.6
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 4.2e-275 951.4 787 64.3
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 3.0e-273 945.3 780 65.3
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 4.4e-272 941.4 635 76.4
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 7.4e-272 940.6 780 64.7
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 8.2e-271 937.2 635 77.2
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.5e-269 931.8 635 76.5
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 7.0e-262 907.5 827 59.5
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 5.9e-261 904.4 794 63.4
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.5e-256 889.8 781 60.9
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.4e-254 882.5 780 61.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 7.0e-254 880.9 779 62.3
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 5.5e-251 871.3 796 58.8
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.1e-242 842.8 807 57.1
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.1e-233 812.4 764 56.3
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.1e-230 803.9 715 63.8
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.7e-228 796.6 781 57.4
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 8.6e-228 794.3 811 55.6
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 8.4e-207 724.5 664 61.1
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 9.0e-201 704.5 786 50.4
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 7.6e-192 674.9 480 73.1
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.6e-184 649.8 831 46.9
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.6e-184 649.8 831 46.9
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 4.5e-176 622.5 855 44.7
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 9.4e-174 614.8 819 46.6
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 1.7e-159 567.4 400 76.2
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.5e-158 563.5 532 60.0
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.2e-157 561.2 457 64.3
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.2e-156 555.8 644 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 5.7e-155 552.4 822 41.2
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 1.2e-152 544.7 572 53.8
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 2.6e-152 543.5 609 57.5
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 2.9e-151 540.0 432 65.7
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.5e-150 537.7 609 52.1
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 8.3e-138 495.4 617 53.6
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 5.8e-99 366.3 708 40.0
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 4.8e-93 346.7 465 49.5
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 8.7e-79 299.3 218 74.3
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 3.9e-71 273.9 761 30.7
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 8.7e-71 272.7 199 70.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-70 271.9 788 32.4
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 4.8e-69 266.9 243 61.3
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-67 262.3 189 71.4
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 2.0e-67 261.5 189 71.4
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 2.0e-67 261.5 189 71.4
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 1.3e-58 232.3 201 62.2
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 6.3e-53 213.4 508 35.2
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 2.0e-46 191.8 144 68.8
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 2.0e-38 165.2 109 70.6
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.5e-34 150.2 204 46.6
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 9.4e-33 146.4 85 82.4
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.0e-32 143.3 359 31.5
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.2e-31 140.6 128 59.4
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 9.8e-30 136.3 142 50.7
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 1.7e-29 135.6 71 88.7
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.8e-29 134.8 80 73.8
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.7e-27 128.3 75 72.0
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.7e-27 128.3 75 72.0
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 8.0e-24 116.7 75 81.3
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.3e-21 107.1 140 50.0
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.0e-18 97.4 107 43.9
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-16 92.0 109 56.9
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 2.8e-16 91.7 57 84.2
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 8.0e-16 90.1 60 70.0
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.0e-15 87.8 108 48.1
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.2e-15 87.4 85 52.9
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 4.9e-13 80.9 59 62.7
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 4.1e-12 77.8 52 82.7
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 7.8e-11 73.6 100 44.0
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 1.0e-10 73.2 50 82.0
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 1.7e-10 72.4 77 53.2
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 5.0e-10 70.9 50 78.0
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.5e-09 69.3 128 39.8
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 2.5e-09 68.6 65 63.1
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 2.5e-09 68.6 76 55.3
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 3.1e-07 61.6 106 39.6
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.6e-06 58.5 247 27.5


User provided reference genes

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