Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 7.7e-115 417.2 211 100.0
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 1.5e-105 386.3 211 94.3
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 1.5e-105 386.3 211 94.3
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 8.3e-101 370.5 203 94.1
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 1.7e-98 362.8 211 88.2
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 5.1e-90 334.7 215 85.1
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 1.3e-61 240.4 215 66.0
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 2.4e-60 236.1 213 64.8
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 9.3e-60 234.2 215 64.2
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 9.3e-60 234.2 215 64.2
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 9.3e-60 234.2 215 64.2
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 2.7e-59 232.6 215 64.7
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 5.6e-57 224.9 215 63.3
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 2.8e-56 222.6 223 65.9
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 2.8e-48 196.1 223 56.5
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.8e-47 193.4 216 56.9
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 9.0e-47 191.0 222 55.4
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 2.5e-41 172.9 234 51.3
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 4.3e-41 172.2 223 51.6
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 2.8e-40 169.5 223 52.5
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 8.2e-40 167.9 225 51.6
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 4.1e-39 165.6 222 54.1
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 9.0e-39 164.5 221 53.8
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 1.5e-38 163.7 221 52.5
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 2.6e-38 162.9 221 52.0
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 3.4e-38 162.5 227 52.0
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 4.5e-38 162.2 227 49.8
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.3e-37 160.6 216 51.9
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 5.0e-37 158.7 224 46.4
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 8.5e-37 157.9 226 51.3
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 4.2e-36 155.6 226 50.9
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 9.4e-36 154.5 230 48.7
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 9.4e-36 154.5 226 49.1
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.2e-35 154.1 223 51.1
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 2.1e-35 153.3 221 50.7
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 3.6e-35 152.5 220 50.5
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 6.1e-35 151.8 222 52.3
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 6.1e-35 151.8 225 50.7
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 7.9e-35 151.4 228 47.4
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 1.0e-34 151.0 220 50.0
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.8e-34 150.2 222 47.3
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 3.9e-34 149.1 221 50.7
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 5.1e-34 148.7 222 50.5
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 2.0e-33 146.7 222 50.9
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.5e-33 146.4 225 48.0
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.5e-33 146.4 227 46.3
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 2.5e-33 146.4 219 48.4
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 5.7e-33 145.2 222 49.5
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 5.7e-33 145.2 220 47.3
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 7.4e-33 144.8 227 47.6
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 4.8e-32 142.1 226 49.6
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 4.8e-32 142.1 226 49.6
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 6.3e-32 141.7 220 47.7
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 6.3e-32 141.7 220 47.7
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 6.3e-32 141.7 220 47.7
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 8.2e-32 141.4 218 49.5
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 1.4e-31 140.6 219 49.8
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.8e-31 140.2 225 47.1
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 1.8e-31 140.2 221 46.2
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 2.4e-31 139.8 217 42.4
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 2.4e-31 139.8 220 48.6
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 9.1e-31 137.9 226 45.6
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 9.1e-31 137.9 222 45.9
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 1.2e-30 137.5 217 44.2
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.5e-30 137.1 222 47.7
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 3.4e-30 136.0 219 48.4
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 3.4e-30 136.0 212 46.7
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 4.5e-30 135.6 227 47.1
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 1.0e-29 134.4 100 72.0
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.0e-29 134.4 212 46.2
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 1.0e-29 134.4 223 47.1
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.3e-29 134.0 227 44.9
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.7e-29 133.7 211 45.0
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 2.2e-29 133.3 226 44.7
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 8.5e-29 131.3 221 43.9
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 8.5e-29 131.3 218 45.9
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.1e-28 131.0 224 45.1
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.4e-28 130.6 218 46.3
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.9e-28 130.2 222 45.0
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 5.5e-28 128.6 203 47.3
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 7.2e-28 128.3 227 44.5
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 9.4e-28 127.9 227 44.9
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 2.1e-27 126.7 220 45.5
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 2.7e-27 126.3 209 43.5
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.4e-26 124.0 220 45.5
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.8e-26 123.6 229 44.1
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 2.3e-26 123.2 230 43.5
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.0e-26 122.9 222 42.3
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 5.1e-26 122.1 198 45.5
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.7e-26 121.7 220 40.5
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 8.8e-26 121.3 226 44.7
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 8.8e-26 121.3 226 44.7
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 8.8e-26 121.3 222 45.0
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 2.6e-25 119.8 214 42.5
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 4.4e-25 119.0 227 41.4
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 7.4e-25 118.2 220 40.9
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 1.3e-24 117.5 228 42.5
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 1.3e-24 117.5 228 42.5
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 1.3e-24 117.5 226 42.5
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.3e-24 117.5 220 42.7
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.3e-24 117.5 209 42.6
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 2.2e-24 116.7 222 43.7
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 8.2e-24 114.8 218 44.5
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.4e-23 114.0 224 43.3
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.8e-23 113.6 220 41.8
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 2.4e-23 113.2 211 40.3
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 2.4e-23 113.2 223 41.3
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 4.1e-23 112.5 221 41.6
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 7.0e-23 111.7 213 42.3
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 3.5e-22 109.4 218 42.2
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 1.0e-21 107.8 222 40.1
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 1.7e-21 107.1 228 38.6
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 3.8e-21 105.9 210 43.3
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 6.5e-21 105.1 223 40.4
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 1.5e-20 104.0 165 46.7
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 4.2e-20 102.4 201 41.8
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 9.4e-20 101.3 250 38.4
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 9.4e-20 101.3 222 40.1
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.6e-19 100.5 211 42.2
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 1.6e-19 100.5 222 39.2
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.1e-19 100.1 211 42.7
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 6.1e-19 98.6 237 39.2
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.8e-18 97.1 221 39.8
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 3.0e-18 96.3 214 33.6
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 3.0e-18 96.3 242 35.1
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 4.0e-18 95.9 227 37.9
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 8.8e-18 94.7 219 37.0
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 1.1e-17 94.4 220 37.7
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.1e-15 87.8 219 35.6
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 5.3e-15 85.5 211 34.6
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.3e-13 80.9 222 38.7
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 3.8e-13 79.3 202 35.6
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 6.5e-13 78.6 222 38.3
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 8.5e-13 78.2 218 33.9
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.2e-12 75.9 109 44.0
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 2.1e-11 73.6 98 48.0
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 4.7e-11 72.4 161 41.6
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 4.0e-10 69.3 75 60.0
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 2.2e-08 63.5 95 48.4
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 6.3e-08 62.0 225 30.2
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.4e-07 60.8 219 29.7


User provided reference genes

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