Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 1.5e-94 350.1 273 100.0
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 1.5e-94 350.1 273 100.0
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 1.8e-79 300.1 273 80.2
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 2.0e-78 296.6 298 83.2
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 2.0e-75 286.6 136 98.5
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 4.4e-70 268.9 287 77.7
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 5.6e-65 251.9 274 75.2
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.1e-64 250.0 276 66.7
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.8e-63 246.9 134 83.6
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 9.8e-62 241.1 132 82.6
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 6.4e-61 238.4 136 81.6
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.7e-59 233.0 125 83.2
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.6e-51 207.2 156 66.0
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 4.9e-45 185.7 131 65.6
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.7e-37 160.6 135 53.3
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.1e-36 157.9 131 54.2
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 2.4e-36 156.8 134 50.0
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 7.1e-36 155.2 131 52.7
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 9.3e-36 154.8 130 53.1
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 9.3e-36 154.8 130 52.3
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.6e-35 154.1 131 52.7
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.7e-35 153.3 131 51.9
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 7.8e-35 151.8 127 51.2
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 1.0e-34 151.4 111 55.9
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.0e-34 151.4 137 50.4
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.0e-34 151.4 131 53.4
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.3e-34 151.0 135 51.9
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 1.3e-34 151.0 127 50.4
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 3.9e-34 149.4 134 48.5
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 5.1e-34 149.1 127 49.6
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 8.7e-34 148.3 134 50.0
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 1.1e-33 147.9 131 49.6
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.1e-33 147.9 136 50.7
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.5e-33 147.5 121 55.4
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 2.5e-33 146.7 127 48.0
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 3.3e-33 146.4 133 48.9
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 7.3e-33 145.2 119 50.4
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 1.3e-32 144.4 107 55.1
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 1.6e-32 144.1 128 48.4
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 3.6e-32 142.9 107 56.1
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 4.8e-32 142.5 123 48.8
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 4.8e-32 142.5 109 53.2
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.1e-31 141.4 127 48.0
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 1.1e-31 141.4 130 47.7
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 1.4e-31 141.0 106 54.7
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.8e-31 140.6 128 47.7
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 1.8e-31 140.6 127 49.6
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 3.1e-31 139.8 127 44.9
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 3.1e-31 139.8 110 50.0
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 3.1e-31 139.8 110 50.9
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 3.1e-31 139.8 127 45.7
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 4.0e-31 139.4 131 46.6
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 5.3e-31 139.0 131 48.1
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 5.3e-31 139.0 129 47.3
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 6.9e-31 138.7 127 48.0
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 9.0e-31 138.3 101 53.5
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 9.0e-31 138.3 101 53.5
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 1.2e-30 137.9 127 47.2
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.2e-30 137.9 101 52.5
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.2e-30 137.9 101 52.5
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 1.5e-30 137.5 129 48.1
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.0e-30 137.1 100 55.0
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 3.4e-30 136.3 129 46.5
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 4.5e-30 136.0 134 41.8
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 5.8e-30 135.6 129 45.0
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 9.9e-30 134.8 131 46.6
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 9.9e-30 134.8 134 44.8
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 2.2e-29 133.7 131 42.7
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 8.4e-29 131.7 110 50.0
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 8.4e-29 131.7 131 45.8
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.1e-28 131.3 128 48.4
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.4e-28 131.0 133 43.6
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 1.9e-28 130.6 134 47.0
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 1.9e-28 130.6 122 49.2
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.9e-28 130.6 127 44.9
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.9e-28 130.6 128 42.2
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 3.2e-28 129.8 111 52.3
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 4.2e-28 129.4 132 44.7
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.2e-28 129.4 96 51.0
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 4.2e-28 129.4 105 50.5
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 4.2e-28 129.4 108 47.2
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 4.2e-28 129.4 108 47.2
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 5.4e-28 129.0 95 55.8
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 9.3e-28 128.3 127 46.5
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 9.3e-28 128.3 131 45.0
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.6e-27 127.5 133 41.4
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 3.5e-27 126.3 102 52.0
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 4.6e-27 125.9 102 47.1
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 4.6e-27 125.9 92 53.3
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 5.1e-26 122.5 127 48.0
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 6.7e-26 122.1 91 52.7
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.1e-25 121.3 130 43.1
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 2.5e-25 120.2 93 51.6
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 4.3e-25 119.4 123 50.4
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 4.3e-25 119.4 123 50.4
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 4.3e-25 119.4 114 46.5
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 7.4e-25 118.6 112 43.8
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 9.6e-25 118.2 102 48.0
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 9.6e-25 118.2 88 52.3
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.6e-24 117.5 99 47.5
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 2.1e-24 117.1 114 47.4
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 2.1e-24 117.1 99 49.5
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 2.8e-24 116.7 101 45.5
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.8e-24 116.7 102 49.0
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 2.8e-24 116.7 133 37.6
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 6.2e-24 115.5 120 44.2
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 8.1e-24 115.2 110 44.5
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.1e-23 114.8 129 41.1
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 4.0e-23 112.8 102 44.1
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 4.0e-23 112.8 103 45.6
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 5.3e-23 112.5 117 42.7
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 5.3e-23 112.5 102 44.1
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 9.0e-23 111.7 100 48.0
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 2.0e-22 110.5 105 43.8
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.4e-22 109.8 110 43.6
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.4e-22 109.8 105 42.9
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 3.4e-22 109.8 124 41.9
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 5.8e-22 109.0 103 43.7
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 7.6e-22 108.6 105 42.9
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 7.6e-22 108.6 103 46.6
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 7.6e-22 108.6 113 44.2
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 7.6e-22 108.6 92 51.1
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.0e-21 108.2 98 42.9
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.0e-21 108.2 108 42.6
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 1.7e-21 107.5 85 52.9
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 2.2e-21 107.1 105 42.9
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 3.8e-21 106.3 125 40.8
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 6.5e-21 105.5 108 44.4
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 6.5e-21 105.5 110 40.0
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.4e-20 104.4 97 44.3
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 1.9e-20 104.0 114 41.2
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 4.2e-20 102.8 105 41.9
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 5.5e-20 102.4 97 43.3
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.1e-19 100.5 128 38.3
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 2.1e-19 100.5 94 44.7
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 6.0e-19 99.0 92 43.5
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 1.0e-18 98.2 90 42.2
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 1.3e-18 97.8 128 39.1
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 1.8e-18 97.4 128 39.1
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 1.8e-18 97.4 128 39.1
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 1.8e-18 97.4 128 39.1
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 1.8e-18 97.4 128 39.1
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 1.8e-18 97.4 128 37.5
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.8e-18 97.4 107 42.1
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 2.3e-18 97.1 98 40.8
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 2.3e-18 97.1 96 38.5
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.9e-18 96.3 131 36.6
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 5.1e-18 95.9 99 37.4
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 5.1e-18 95.9 97 40.2
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 6.7e-18 95.5 98 40.8
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 6.7e-18 95.5 113 40.7
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 6.7e-18 95.5 104 39.4
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 8.7e-18 95.1 97 43.3
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.7e-18 95.1 97 43.3
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 8.7e-18 95.1 97 41.2
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 8.7e-18 95.1 93 43.0
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 1.1e-17 94.7 98 39.8
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.5e-17 94.4 98 42.9
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 1.9e-17 94.0 116 37.9
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 2.5e-17 93.6 113 40.7
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 4.3e-17 92.8 131 37.4
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 4.3e-17 92.8 76 47.4
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.7e-17 92.4 113 38.9
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 7.4e-17 92.0 110 34.5
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.3e-16 91.3 88 43.2
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 1.6e-16 90.9 89 42.7
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 3.1e-15 86.7 98 42.9
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 6.9e-15 85.5 100 39.0
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 9.0e-15 85.1 105 38.1
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 3.4e-14 83.2 65 50.8
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.5e-14 82.8 113 36.3
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.7e-13 80.9 98 36.7
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 1.7e-13 80.9 92 40.2
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 5.0e-13 79.3 66 47.0
Oeu056372.1 Olea europaea HOM05D002444 ORTHO05D004748 1.3e-08 64.7 48 58.3
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 2.2e-08 63.9 75 38.7
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 2.8e-08 63.5 124 34.7
Cpa.g.sc2.284 Carica papaya HOM05D008739 ORTHO05D010871 1.8e-07 60.8 90 34.4
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.1e-07 59.7 70 37.1
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 4.1e-07 59.7 73 31.5
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 6.9e-07 58.9 52 44.2
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 2.0e-06 57.4 68 35.3
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 4.5e-06 56.2 63 41.3
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 4.5e-06 56.2 63 41.3
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 4.5e-06 56.2 87 29.9


User provided reference genes

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