Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 0.0e+00 1315.1 693 100.0
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 0.0e+00 1312.0 693 99.7
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 0.0e+00 1265.0 698 96.4
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 0.0e+00 1247.6 693 95.8
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.7e-288 995.7 701 79.3
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 3.2e-266 921.8 696 74.3
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.9e-255 885.9 705 73.0
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.3e-248 863.2 700 70.0
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 3.8e-243 845.1 700 69.7
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.3e-232 809.3 701 67.8
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.2e-206 723.0 523 79.2
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 5.3e-197 691.8 707 58.1
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 7.2e-194 681.4 700 55.4
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.3e-168 596.7 517 66.5
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.5e-143 514.2 477 62.7
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 4.4e-143 512.7 726 43.1
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 6.4e-142 508.8 725 44.7
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 5.4e-141 505.8 659 44.2
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 6.0e-140 502.3 661 46.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.7e-139 500.7 718 44.7
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 6.6e-139 498.8 646 47.8
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 9.6e-138 495.0 713 43.2
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 9.6e-138 495.0 712 45.2
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 9.6e-138 495.0 721 42.7
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 6.9e-136 488.8 721 43.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 7.6e-135 485.3 730 42.1
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.9e-133 480.7 712 43.1
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 7.1e-133 478.8 741 42.0
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 9.3e-133 478.4 710 45.5
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.6e-132 477.6 669 45.3
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.6e-132 477.6 710 45.5
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 2.7e-132 476.9 721 40.5
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 4.6e-132 476.1 704 45.2
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.1e-130 471.5 718 42.8
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.9e-130 470.7 718 43.0
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.8e-129 466.1 710 45.2
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 4.8e-129 466.1 662 43.2
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 6.2e-129 465.7 716 41.8
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 5.8e-127 459.1 708 41.5
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.3e-126 458.0 717 41.7
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.7e-126 457.6 713 42.2
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.2e-126 457.2 653 44.3
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 3.8e-126 456.4 608 43.3
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 4.2e-125 453.0 707 42.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.0e-123 448.4 711 40.9
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 2.3e-123 447.2 708 40.5
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 3.9e-123 446.4 715 40.8
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 4.3e-122 443.0 716 40.9
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.8e-121 440.3 674 42.9
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 4.8e-121 439.5 709 40.9
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 5.3e-120 436.0 737 39.6
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.2e-119 434.9 709 39.9
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.2e-119 434.9 722 42.1
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.0e-119 434.1 692 39.5
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.9e-118 430.3 722 42.0
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.6e-116 424.5 685 42.2
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 2.7e-116 423.7 725 40.4
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.6e-116 422.9 726 38.8
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 6.1e-116 422.5 705 41.6
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 6.1e-116 422.5 725 39.0
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 7.9e-116 422.2 719 39.1
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 2.3e-115 420.6 644 43.0
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 3.9e-115 419.9 606 43.4
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 5.1e-115 419.5 656 40.9
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.5e-114 417.9 727 40.0
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.4e-114 415.6 744 38.0
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 2.2e-113 414.1 750 39.5
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.2e-113 412.1 713 40.5
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 3.4e-111 406.8 712 39.7
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.5e-111 406.4 748 37.8
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.4e-109 401.4 677 40.0
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 1.9e-109 401.0 585 41.5
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 2.1e-108 397.5 733 39.4
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 2.3e-107 394.0 709 38.4
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 3.9e-107 393.3 617 41.2
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 2.2e-105 387.5 654 39.3
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.2e-105 387.5 683 37.5
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 2.2e-105 387.5 683 38.1
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.4e-104 384.8 595 40.2
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.8e-104 384.4 784 37.6
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 9.1e-104 382.1 741 38.7
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.4e-103 380.2 687 38.6
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 7.7e-103 379.0 588 42.3
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.3e-102 378.3 713 39.6
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 1.4e-99 368.2 698 36.0
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 5.7e-98 362.8 725 35.4
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 7.4e-98 362.5 542 42.3
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 5.9e-95 352.8 714 36.4
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 8.5e-94 349.0 694 36.6
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.5e-93 348.2 708 35.6
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 5.5e-93 346.3 710 35.2
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.2e-92 345.1 568 40.7
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.0e-91 342.0 468 43.6
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.6e-90 337.4 661 37.2
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.1e-88 332.0 591 34.5
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 4.1e-88 330.1 674 36.8
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 8.5e-86 322.4 723 34.0
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.6e-84 318.2 661 34.8
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.2e-82 312.0 715 33.8
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 1.2e-82 312.0 507 41.0
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.7e-81 308.1 260 74.6
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.8e-80 304.7 462 44.4
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 2.1e-76 291.2 635 32.4
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.7e-76 290.8 488 40.0
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.8e-75 288.1 360 45.8
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 5.2e-75 286.6 325 54.5
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.0e-74 284.6 459 39.4
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.0e-74 284.6 216 69.4
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.0e-74 284.6 458 39.3
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 6.3e-73 279.6 647 31.8
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 6.3e-73 279.6 727 30.8
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.6e-71 275.0 495 40.2
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.7e-71 274.2 696 32.3
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.3e-70 271.2 326 54.9
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.3e-70 271.2 576 35.1
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 8.0e-68 262.7 602 35.0
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.8e-67 261.5 622 31.7
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.1e-64 252.3 377 39.8
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.4e-64 251.1 654 30.0
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.0e-63 248.1 427 37.9
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.0e-63 248.1 618 33.3
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.5e-61 241.9 659 29.6
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.5e-61 241.9 659 29.6
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 2.3e-59 234.6 325 48.3
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.4e-56 225.3 436 36.9
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 3.0e-54 217.6 500 34.4
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.6e-50 204.5 339 39.8
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 2.1e-47 194.9 183 56.3
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 3.7e-41 174.1 234 46.6
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.0e-38 166.0 214 44.9
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.9e-37 161.8 113 75.2
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.4e-35 155.6 421 33.5
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.6e-34 151.4 376 32.4
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.9e-34 149.4 164 48.2
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 6.4e-33 146.7 256 44.9
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.0e-30 137.9 246 38.2
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.9e-29 135.2 183 48.6
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 4.3e-29 134.0 425 29.4
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.3e-27 127.1 224 36.2
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.2e-25 121.7 327 29.1
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 8.7e-22 109.8 369 29.5
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.5e-21 109.0 65 84.6
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 7.4e-21 106.7 202 35.6
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.1e-20 105.1 103 52.4
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 2.1e-20 105.1 127 42.5
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-19 102.8 385 26.0
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.3e-17 95.9 82 56.1
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.2e-17 95.1 98 53.1
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 3.8e-17 94.4 217 31.8
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.2e-15 89.4 186 33.3
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.6e-15 89.0 86 52.3
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.9e-14 84.3 80 50.0
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.5e-13 82.4 124 37.1
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.3e-12 79.3 89 42.7
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 8.1e-12 76.6 103 40.8
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 6.9e-11 73.6 100 41.0
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.5e-10 72.4 139 36.7
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 2.6e-10 71.6 327 28.1
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 9.3e-08 63.2 101 37.6
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 3.5e-07 61.2 586 22.9
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 6.7e-06 57.0 189 29.1


User provided reference genes

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