Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p38210 Brassica napus HOM05D000812 ORTHO05D000672 1.7e-58 229.2 117 100.0
BraA06t26736Z Brassica rapa HOM05D000812 ORTHO05D000672 1.7e-58 229.2 117 100.0
A04p04060 Brassica napus HOM05D000812 ORTHO05D000672 9.4e-54 213.4 117 94.0
A05p05630 Brassica napus HOM05D000812 ORTHO05D000672 4.7e-53 211.1 117 93.2
A09p01150 Brassica napus HOM05D000812 ORTHO05D000672 7.5e-51 203.8 121 90.1
BcaC05g26277 Brassica carinata HOM05D000812 ORTHO05D000672 6.8e-36 154.1 105 78.1
BolC5t30987H Brassica oleracea HOM05D000812 ORTHO05D000672 6.8e-36 154.1 105 78.1
C05p22890 Brassica napus HOM05D000812 ORTHO05D000672 1.5e-35 152.9 105 77.1
BcaB07g32345 Brassica carinata HOM05D000812 ORTHO05D000672 7.8e-32 140.6 108 67.6
BraA09t39605Z Brassica rapa HOM05D000812 ORTHO05D000672 1.5e-30 136.3 104 71.2
A09p41120 Brassica napus HOM05D000812 ORTHO05D000672 1.2e-29 133.3 104 70.2
Sp1g20990 Schrenkiella parvula HOM05D000812 ORTHO05D000672 3.6e-29 131.7 108 64.8
Thhalv10008227m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 2.6e-27 125.6 107 63.6
AL1G37310 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 3.7e-26 121.7 106 61.3
CARHR023980 Cardamine hirsuta HOM05D000812 ORTHO05D000672 1.6e-24 116.3 113 56.6
AT1G23550 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 3.5e-24 115.2 112 58.9
BcaB03g14144 Brassica carinata HOM05D000812 ORTHO05D000672 1.0e-23 113.6 106 59.4
A07p13840 Brassica napus HOM05D000812 ORTHO05D000672 3.6e-21 105.1 94 58.5
BcaC06g35043 Brassica carinata HOM05D000812 ORTHO05D000672 6.2e-21 104.4 94 59.6
C07p20390 Brassica napus HOM05D000812 ORTHO05D000672 6.2e-21 104.4 94 59.6
BolC7t42560H Brassica oleracea HOM05D000812 ORTHO05D000672 6.2e-21 104.4 94 59.6
BraA07t29138Z Brassica rapa HOM05D000812 ORTHO05D000672 1.8e-20 102.8 94 57.4
Aa31LG7G7600 Aethionema arabicum HOM05D000812 ORTHO05D000672 2.3e-20 102.4 104 51.9
Carub.0001s2309 Capsella rubella HOM05D000812 ORTHO05D000672 3.4e-19 98.6 107 51.4
A08p00970 Brassica napus HOM05D000812 ORTHO05D000672 7.5e-19 97.4 93 57.0
A02p33030 Brassica napus HOM05D000812 ORTHO05D000672 9.8e-19 97.1 93 57.0
A04p19260 Brassica napus HOM05D000812 ORTHO05D000672 9.8e-19 97.1 93 57.0
Carub.0002s1713 Capsella rubella HOM05D000812 ORTHO05D000672 4.9e-18 94.7 106 50.0
Thhalv10019788m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 1.4e-17 93.2 108 46.3
CARHR063610 Cardamine hirsuta HOM05D000812 ORTHO05D000672 4.1e-17 91.7 105 47.6
THA.LOC104822966 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 1.6e-16 89.7 110 49.1
AL2G29810 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 6.0e-16 87.8 106 44.3
Aa31LG4G10500 Aethionema arabicum HOM05D000812 ORTHO05D000672 3.3e-14 82.0 107 45.8
AT1G70440 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 2.8e-13 79.0 106 44.3
Sp5g25520 Schrenkiella parvula HOM05D000812 ORTHO05D000672 1.1e-12 77.0 113 40.7
THA.LOC104822148 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 2.6e-11 72.4 105 41.0
BcaB03g14803 Brassica carinata HOM05D000812 ORTHO05D000672 1.3e-10 70.1 92 42.4
A07p36820 Brassica napus HOM05D000812 ORTHO05D000672 3.7e-10 68.6 92 43.5
DCAR_024452 Daucus carota HOM05D000812 ORTHO05D000672 3.7e-10 68.6 97 41.2
Dinv24842 Davidia involucrata HOM05D000812 ORTHO05D002628 3.7e-10 68.6 108 41.7
BcaC08g46487 Brassica carinata HOM05D000812 ORTHO05D000672 4.9e-10 68.2 92 43.5
C06p44300 Brassica napus HOM05D000812 ORTHO05D000672 4.9e-10 68.2 92 43.5
BolC6t39500H Brassica oleracea HOM05D000812 ORTHO05D000672 1.1e-09 67.0 92 41.3
BraA07t31248Z Brassica rapa HOM05D000812 ORTHO05D000672 1.9e-09 66.2 92 42.4
Prupe.1G252800 Prunus persica HOM05D000812 ORTHO05D000672 9.2e-09 63.9 113 39.8
Manes.13G029600 Manihot esculenta HOM05D000812 ORTHO05D000672 6.0e-08 61.2 92 31.5
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 1.0e-07 60.5 113 38.9
Cfa009153 Carpinus fangiana HOM05D000812 ORTHO05D000672 1.3e-07 60.1 108 36.1
Haze_12186 Corylus avellana HOM05D000812 ORTHO05D000672 1.3e-07 60.1 108 35.2
PGR083G1086 Punica granatum HOM05D000812 ORTHO05D000672 1.3e-07 60.1 106 35.8
Manes.12G028100 Manihot esculenta HOM05D000812 ORTHO05D000672 5.1e-07 58.2 114 29.8
Solyc05g005280.4 Solanum lycopersicum HOM05D000812 ORTHO05D000672 5.1e-07 58.2 91 35.2
Sopen05g001280 Solanum pennellii HOM05D000812 ORTHO05D000672 5.1e-07 58.2 75 40.0
RcHm_v2.0_Chr5g0030861 Rosa chinensis HOM05D000812 ORTHO05D000672 6.6e-07 57.8 60 46.7
Lj3A1053T42 Lonicera japonica HOM05D000812 ORTHO05D000672 8.6e-07 57.4 67 37.3
MD16G1093700 Malus domestica HOM05D000812 ORTHO05D000672 8.6e-07 57.4 112 38.4
Peaxi162Scf00710g00414 Petunia axillaris HOM05D000812 ORTHO05D000672 8.6e-07 57.4 112 34.8
Potri.012G081100 Populus trichocarpa HOM05D000812 ORTHO05D000672 1.1e-06 57.0 90 40.0
Rhsim12G0118200 Rhododendron simsii HOM05D000812 ORTHO05D000672 1.5e-06 56.6 67 44.8
MD13G1092800 Malus domestica HOM05D000812 ORTHO05D000672 3.3e-06 55.5 112 37.5
Ciclev10032827m.g Citrus clementina HOM05D000812 ORTHO05D000672 4.3e-06 55.1 59 42.4
Nn3g16865 Nelumbo nucifera HOM05D000812 ORTHO05D000672 4.3e-06 55.1 73 38.4
PGSC0003DMG400013481 Solanum tuberosum HOM05D000812 ORTHO05D000672 7.3e-06 54.3 91 34.1
Solyc05g005290.4 Solanum lycopersicum HOM05D000812 ORTHO05D000672 9.5e-06 53.9 102 32.4


User provided reference genes

Program Settings