Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 9.0e-63 243.4 124 100.0
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 9.0e-63 243.4 124 100.0
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 5.1e-34 147.9 106 75.5
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 5.1e-34 147.9 106 75.5
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 2.3e-18 95.9 71 71.8
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.2e-13 79.3 102 52.0
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.9e-12 76.3 97 53.6
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.5e-12 75.9 97 51.5
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.7e-11 72.4 109 46.8
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 3.6e-11 72.0 97 51.5
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 4.7e-11 71.6 97 51.5
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 4.7e-11 71.6 97 51.5
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 6.1e-11 71.2 109 45.9
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 6.1e-11 71.2 109 45.9
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.0e-10 70.5 109 45.9
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.8e-10 69.7 104 47.1
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.8e-10 69.7 104 47.1
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.8e-10 69.7 97 50.5
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 2.3e-10 69.3 109 45.0
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 8.8e-10 67.4 109 45.0
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 1.2e-09 67.0 110 44.5
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-09 66.6 98 46.9
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.5e-09 66.6 110 43.6
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.5e-09 66.6 97 48.5
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 2.0e-09 66.2 97 46.4
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.0e-09 66.2 97 46.4
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 4.4e-09 65.1 80 50.0
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 4.4e-09 65.1 110 42.7
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 7.5e-09 64.3 111 43.2
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 7.5e-09 64.3 92 43.5
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 7.5e-09 64.3 119 37.8
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 9.8e-09 63.9 110 41.8
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-08 63.5 110 43.6
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.3e-08 63.5 110 43.6
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.3e-08 63.5 109 43.1
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.3e-08 63.5 97 45.4
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.7e-08 63.2 110 43.6
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.7e-08 63.2 110 42.7
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 2.2e-08 62.8 97 44.3
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.2e-08 62.8 108 43.5
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.2e-08 62.8 109 43.1
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.8e-08 62.4 110 44.5
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 3.7e-08 62.0 80 48.8
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 3.7e-08 62.0 80 48.8
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 3.7e-08 62.0 80 48.8
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 3.7e-08 62.0 108 42.6
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 4.9e-08 61.6 97 45.4
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 4.9e-08 61.6 108 43.5
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 4.9e-08 61.6 97 45.4
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.9e-08 61.6 110 43.6
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 4.9e-08 61.6 97 43.3
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 8.3e-08 60.8 97 45.4
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 8.3e-08 60.8 112 41.1
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 8.3e-08 60.8 129 39.5
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 1.1e-07 60.5 104 43.3
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.1e-07 60.5 97 43.3
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.4e-07 60.1 82 52.4
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.4e-07 60.1 110 42.7
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.8e-07 59.7 104 43.3
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.8e-07 59.7 104 43.3
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.8e-07 59.7 104 43.3
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 2.4e-07 59.3 110 41.8
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 3.1e-07 58.9 97 44.3
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 3.1e-07 58.9 117 41.0
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 4.1e-07 58.5 105 42.9
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.1e-07 58.5 97 44.3
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 5.4e-07 58.2 97 41.2
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 5.4e-07 58.2 110 42.7
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 5.4e-07 58.2 112 39.3
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 5.4e-07 58.2 109 40.4
C05p45840 Brassica napus HOM05D004301 ORTHO05D103036 7.0e-07 57.8 48 64.6
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 7.0e-07 57.8 97 44.3
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 7.0e-07 57.8 97 42.3
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 9.2e-07 57.4 108 41.7
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 9.2e-07 57.4 108 41.7
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 9.2e-07 57.4 95 44.2
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 9.2e-07 57.4 97 45.4
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 9.2e-07 57.4 97 45.4
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-06 57.0 97 43.3
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.2e-06 57.0 108 41.7
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 1.2e-06 57.0 95 44.2
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.2e-06 57.0 97 43.3
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.6e-06 56.6 110 40.9
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 1.6e-06 56.6 97 43.3
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.6e-06 56.6 110 40.9
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.6e-06 56.6 97 42.3
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 2.7e-06 55.8 97 41.2
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 3.5e-06 55.5 100 41.0
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 3.5e-06 55.5 110 41.8
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 3.5e-06 55.5 97 42.3
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 3.5e-06 55.5 95 43.2
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 5.9e-06 54.7 97 42.3
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.9e-06 54.7 97 42.3
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.9e-06 54.7 97 42.3


User provided reference genes

Program Settings