Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 5.8e-121 437.6 222 100.0
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 3.5e-110 401.7 206 98.1
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 3.3e-108 395.2 207 97.1
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 3.3e-108 395.2 207 97.1
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 3.3e-108 395.2 207 97.1
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 9.3e-103 377.1 206 93.2
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.1e-92 343.6 216 82.4
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.3e-91 340.1 215 82.8
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 5.3e-90 334.7 200 84.0
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.9e-87 326.2 184 88.0
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 2.5e-87 325.9 208 79.3
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 7.2e-87 324.3 208 79.3
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.1e-86 322.8 211 78.2
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 3.6e-86 322.0 203 81.8
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.0e-85 320.5 215 76.7
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.0e-85 318.9 211 76.8
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 3.9e-85 318.5 214 76.2
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 5.1e-85 318.2 208 77.9
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 6.7e-85 317.8 213 76.1
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 8.8e-85 317.4 208 77.4
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 2.6e-84 315.8 208 77.9
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 5.7e-84 314.7 208 76.4
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 5.7e-84 314.7 208 76.4
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 9.7e-84 313.9 204 77.0
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.3e-80 303.5 208 73.6
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 1.1e-79 300.4 198 76.8
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.1e-79 300.4 200 76.0
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 8.0e-78 294.3 208 72.6
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.3e-77 292.7 210 71.0
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 2.3e-77 292.7 208 70.2
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.3e-77 292.7 208 69.7
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.2e-77 291.6 203 71.9
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.2e-77 291.6 203 71.9
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.2e-77 291.6 203 71.4
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.0e-76 289.7 208 69.7
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.0e-76 289.7 208 70.2
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 2.6e-76 289.3 203 72.9
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.7e-75 286.6 210 67.1
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 2.8e-75 285.8 214 65.9
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 3.7e-75 285.4 214 66.8
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.3e-75 284.6 210 70.0
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 8.2e-75 284.3 218 66.5
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.4e-74 283.5 216 67.6
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 2.4e-74 282.7 213 64.8
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.1e-74 282.3 221 64.3
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 4.1e-74 282.0 216 67.1
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 9.1e-74 280.8 210 69.0
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.2e-73 280.4 213 68.5
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 4.5e-73 278.5 208 66.3
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 4.5e-73 278.5 220 65.0
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 5.9e-73 278.1 209 67.5
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-72 276.9 204 71.6
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.3e-72 276.9 202 70.8
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 1.7e-72 276.6 223 62.8
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 2.2e-72 276.2 208 67.8
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 2.2e-72 276.2 197 66.5
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 5.0e-72 275.0 207 68.6
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 5.0e-72 275.0 195 70.8
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 5.0e-72 275.0 214 64.5
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 8.5e-72 274.2 205 68.3
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 8.5e-72 274.2 206 67.0
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 8.5e-72 274.2 209 67.9
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 1.5e-71 273.5 197 68.5
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 2.5e-71 272.7 209 64.6
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 2.1e-70 269.6 211 66.4
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.1e-70 269.6 206 64.6
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 2.7e-70 269.2 214 65.0
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.7e-70 269.2 209 65.6
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 4.7e-70 268.5 205 65.9
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 4.7e-70 268.5 198 68.2
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 6.1e-70 268.1 195 68.2
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 6.1e-70 268.1 231 61.0
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 6.1e-70 268.1 193 68.4
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 8.0e-70 267.7 169 76.3
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 8.0e-70 267.7 164 78.7
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.0e-69 267.3 168 76.2
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 1.4e-69 266.9 145 85.5
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 4.0e-69 265.4 209 62.2
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 5.2e-69 265.0 164 78.0
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 8.8e-69 264.2 198 66.7
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.5e-68 263.5 209 65.1
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.6e-68 262.7 212 66.0
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 4.4e-68 261.9 145 82.1
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 5.7e-68 261.5 212 66.0
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 5.7e-68 261.5 212 61.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 9.8e-68 260.8 211 63.5
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 9.8e-68 260.8 151 78.8
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 9.8e-68 260.8 142 84.5
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 1.3e-67 260.4 147 80.3
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 1.7e-67 260.0 211 61.1
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 2.8e-67 259.2 211 61.1
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 2.8e-67 259.2 145 82.1
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 6.3e-67 258.1 200 65.5
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 8.3e-67 257.7 148 79.7
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 8.3e-67 257.7 209 65.1
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 8.3e-67 257.7 214 62.6
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 1.4e-66 256.9 224 59.4
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 3.1e-66 255.8 201 65.2
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 5.4e-66 255.0 208 64.4
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 5.4e-66 255.0 213 63.4
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 7.0e-66 254.6 140 82.1
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.6e-65 253.4 140 81.4
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 2.7e-65 252.7 142 80.3
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 5.9e-65 251.5 144 82.6
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.0e-64 250.8 199 63.8
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.3e-64 250.4 144 78.5
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.3e-64 250.4 208 63.9
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.3e-64 250.4 208 63.9
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 2.2e-64 249.6 220 59.1
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 2.2e-64 249.6 208 63.9
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 2.2e-64 249.6 177 67.8
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 5.0e-64 248.4 140 78.6
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 1.1e-63 247.3 186 66.1
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 5.5e-63 245.0 223 57.4
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.2e-62 243.8 210 61.4
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 2.7e-62 242.7 210 61.0
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 1.0e-61 240.7 164 71.3
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 8.8e-61 237.7 203 61.6
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.2e-59 233.0 203 60.6
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 8.3e-59 231.1 149 73.8
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 1.2e-57 227.3 119 85.7
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 7.7e-57 224.6 119 86.6
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 3.8e-56 222.2 213 56.8
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 2.1e-54 216.5 119 82.4
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 6.1e-54 214.9 202 56.4
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.4e-53 213.8 142 72.5
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 3.0e-53 212.6 199 59.3
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 4.0e-53 212.2 147 70.1
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 8.3e-51 204.5 189 54.0
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.8e-50 203.4 225 52.9
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 3.2e-50 202.6 157 63.1
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 2.0e-49 199.9 166 65.1
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 2.8e-46 189.5 96 86.5
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.8e-46 189.5 96 86.5
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 3.6e-46 189.1 96 85.4
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 6.2e-46 188.3 97 84.5
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.8e-45 186.8 207 53.1
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.8e-45 186.8 98 83.7
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.6e-44 183.0 98 82.7
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 3.4e-44 182.6 98 83.7
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 3.4e-44 182.6 117 76.1
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 7.5e-44 181.4 111 91.0
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 2.9e-43 179.5 96 80.2
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 3.7e-43 179.1 96 83.3
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 2.4e-42 176.4 95 84.2
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.3e-40 170.6 97 76.3
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 8.1e-38 161.4 191 49.2
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 7.3e-31 138.3 96 66.7
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 9.5e-31 137.9 97 70.1
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 5.8e-20 102.1 101 54.5
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 1.6e-17 94.0 106 52.8
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 5.1e-16 89.0 105 47.6


User provided reference genes

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