Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 2358.6 1205 100.0
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 2351.6 1205 99.8
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 2324.7 1206 98.3
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 2322.4 1206 98.3
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 2187.1 1205 92.2
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 2182.5 1202 92.6
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 2136.7 1203 89.4
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 2118.6 1207 88.6
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 2085.8 1208 87.8
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1984.1 1207 82.9
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1974.5 1206 86.5
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1908.3 1185 80.7
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1880.5 1176 80.6
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1874.4 1185 79.6
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1850.9 1184 78.6
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1732.2 1202 71.9
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1719.1 1204 72.0
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1717.6 1136 76.6
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1708.7 1208 71.8
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1703.0 1209 71.6
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1682.2 1204 70.4
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1680.2 1208 69.5
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1666.0 1207 69.8
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1660.2 1203 69.2
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1658.3 1210 69.3
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1656.3 1210 69.1
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1651.3 1205 69.0
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1645.6 1208 69.7
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1644.4 1212 69.1
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1641.7 1204 69.2
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1641.3 1204 69.5
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1640.6 1210 69.1
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1635.2 1210 68.5
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1629.8 1213 68.1
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1627.1 1205 68.2
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1622.8 1181 69.1
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1620.5 1204 68.0
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1615.9 1205 68.0
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1615.5 1202 68.0
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1615.1 1203 68.5
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1612.8 1210 67.4
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1610.5 1210 67.3
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1608.2 1210 67.3
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1607.4 1202 66.6
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1605.9 1206 67.4
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1603.6 1210 67.1
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1600.9 1204 68.4
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1600.5 1210 67.0
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1598.9 1210 66.9
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1590.1 1220 66.3
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1589.7 1205 66.2
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1578.9 1170 68.4
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1572.4 1204 66.6
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1569.7 1202 65.7
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1568.5 1202 66.6
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1567.0 1203 66.2
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1563.1 1180 67.7
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1562.0 1204 65.9
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1560.8 1207 65.5
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1552.0 1208 63.9
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1549.6 1222 64.6
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1548.9 1204 65.7
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1544.6 1204 65.6
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1543.9 1206 64.4
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1542.3 1206 65.8
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1539.6 1181 65.5
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1530.8 1209 64.6
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1526.1 1211 63.8
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1523.1 1204 63.8
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1523.1 1205 63.9
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1517.3 1201 64.4
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1515.7 1207 63.5
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1513.4 1214 63.3
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1513.0 1199 64.4
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1506.5 1206 62.9
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1503.4 1211 63.4
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1495.3 1201 62.9
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1494.2 1204 62.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1493.0 1167 64.3
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1484.9 1183 63.4
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1484.5 1198 62.3
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1483.4 1206 64.4
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1482.2 1205 62.4
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1480.3 1205 62.9
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1478.4 1217 62.0
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1474.9 1206 61.7
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1466.8 1200 61.8
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1450.3 1202 63.1
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1447.6 1116 65.3
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1401.0 1262 58.1
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1400.6 1203 60.2
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1393.3 1137 61.3
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1372.1 884 77.7
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1367.1 1206 59.3
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1356.3 1202 57.7
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1346.3 1207 56.6
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1320.8 1291 55.8
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1316.6 985 67.9
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1309.3 1020 65.2
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1308.5 1182 56.6
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1264.2 1219 54.4
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1181.4 1055 59.1
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1118.2 960 61.8
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1082.0 805 67.8
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 2.6e-300 1035.8 836 64.6
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.0e-292 1009.6 1054 54.5
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 2.0e-284 983.0 1186 48.3
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.1e-279 967.2 1146 47.9
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 5.3e-277 958.4 1154 48.3
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 2.6e-271 939.5 1154 47.4
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 4.1e-269 932.2 1171 47.6
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.5e-268 929.1 1229 42.6
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 5.2e-264 915.2 1237 43.7
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.4e-261 907.1 1239 41.2
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 6.8e-240 835.1 635 66.0
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 5.4e-237 825.5 1216 39.2
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 7.8e-220 768.5 797 52.7
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 4.0e-208 729.6 1214 36.3
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 8.1e-193 678.7 551 62.6
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.8e-191 672.5 569 60.6
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.5e-181 640.6 638 52.8
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.5e-175 621.3 538 59.1
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.3e-161 575.1 416 68.8
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 4.0e-155 553.5 479 62.0
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.4e-138 496.9 486 52.5
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 4.1e-112 410.6 321 64.2
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 2.1e-100 371.7 297 64.0
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 6.2e-84 317.0 1402 23.7
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.9e-72 278.9 267 52.4
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.3e-70 272.7 210 64.8
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.4e-67 262.7 210 65.7
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 3.8e-65 254.6 187 69.5
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 3.6e-55 221.5 213 58.2
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.4e-51 209.5 470 31.7
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.2e-50 206.5 477 30.2
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 8.2e-44 183.7 1235 22.4
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 6.7e-38 164.1 109 76.1
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 1.2e-29 136.7 95 75.8
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 7.7e-26 124.0 96 66.7
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 4.2e-24 118.2 79 82.3
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 7.5e-21 107.5 63 87.3
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 1.5e-16 93.2 83 62.7
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 7.3e-16 90.9 78 59.0
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.6e-15 89.7 376 26.9
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 3.6e-15 88.6 75 61.3
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 1.0e-14 87.0 75 60.0
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 8.9e-14 84.0 73 58.9
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 2.9e-12 79.0 76 52.6
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 3.7e-12 78.6 72 52.8
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 4.1e-11 75.1 49 77.6
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 4.1e-11 75.1 49 77.6
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.0e-11 74.3 72 59.7
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 6.0e-10 71.2 182 29.1
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 4.3e-08 65.1 88 44.3
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 5.2e-06 58.2 48 56.2
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 6.8e-06 57.8 220 23.6


User provided reference genes

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